Literature DB >> 25182331

A multifrequency virtual spectrometer for complex bio-organic systems: vibronic and environmental effects on the UV/Vis spectrum of chlorophyll a.

Vincenzo Barone1, Malgorzata Biczysko, Monika Borkowska-Panek, Julien Bloino.   

Abstract

The subtle interplay of several different effects means that the interpretation and analysis of experimental spectra in terms of structural and dynamic characteristics is a challenging task. In this context, theoretical studies can be helpful, and as such, computational spectroscopy is rapidly evolving from a highly specialized research field toward a versatile and widespread tool. However, in the case of electronic spectra (e.g. UV/Vis, circular dichroism, photoelectron, and X-ray spectra), the most commonly used methods still rely on the computation of vertical excitation energies, which are further convoluted to simulate line shapes. Such treatment completely neglects the influence of nuclear motions, despite the well-recognized notion that a proper account of vibronic effects is often mandatory to correctly interpret experimental findings. Development and validation of improved models rooted into density functional theory (DFT) and its time-dependent extension (TD-DFT) is of course instrumental for the optimal balance between reliability and favorable scaling with the number of electrons. However, the implementation of easy-to-use and effective procedures to simulate vibrationally resolved electronic spectra, and their availability to a wide community of users, is at least equally important for reliable simulations of spectral line shapes for compounds of biological and technological interest. Here, such an approach has been applied to the study of the UV/Vis spectra of chlorophyll a. The results show that properly tailored approaches are feasible for state-of-the-art computational spectroscopy studies, and allow, with affordable computational resources, vibrational and environmental effects on the spectral line shapes to be taken into account for large systems.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  UV/Vis spectra; chlorophyll; environmental effects; line shapes; vibronic effects

Mesh:

Substances:

Year:  2014        PMID: 25182331     DOI: 10.1002/cphc.201402300

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  5 in total

1.  Virtual eyes for technology and cultural heritage: toward computational strategy for new and old indigo-based dyes.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Camille Latouche; Andrea Pasti
Journal:  Theor Chem Acc       Date:  2015-11-11       Impact factor: 1.702

2.  Toward the design of alkynylimidazole fluorophores: computational and experimental characterization of spectroscopic features in solution and in poly(methyl methacrylate).

Authors:  Vincenzo Barone; Fabio Bellina; Malgorzata Biczysko; Julien Bloino; Teresa Fornaro; Camille Latouche; Marco Lessi; Giulia Marianetti; Pierpaolo Minei; Alessandro Panattoni; Andrea Pucci
Journal:  Phys Chem Chem Phys       Date:  2015-10-28       Impact factor: 3.676

3.  Analytical gradients for MP2, double hybrid functionals, and TD-DFT with polarizable embedding described by fluctuating charges.

Authors:  Ivan Carnimeo; Chiara Cappelli; Vincenzo Barone
Journal:  J Comput Chem       Date:  2015-09-24       Impact factor: 3.376

4.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

Authors:  Vincenzo Barone
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016 Mar/Apr

5.  Accurate Computation of the Absorption Spectrum of Chlorophyll a with Pair Natural Orbital Coupled Cluster Methods.

Authors:  Abhishek Sirohiwal; Romain Berraud-Pache; Frank Neese; Róbert Izsák; Dimitrios A Pantazis
Journal:  J Phys Chem B       Date:  2020-09-25       Impact factor: 2.991

  5 in total

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