| Literature DB >> 25182125 |
David Fajardo-Ortiz, Luis Duran, Laura Moreno, Hector Ochoa, Victor M Castaño1.
Abstract
We explored how the knowledge translation and innovation processes are structured when theyresult in innovations, as in the case of liposomal doxorubicin research. In order to map the processes, a literature network analysis was made through Cytoscape and semantic analysis was performed by GOPubmed which is based in the controlled vocabularies MeSH (Medical Subject Headings) and GO (Gene Ontology). We found clusters related to different stages of the technological development (invention, innovation and imitation) and the knowledge translation process (preclinical, translational and clinical research), and we were able to map the historic emergence of Doxil as a paradigmatic nanodrug. This research could be a powerful methodological tool for decision-making and innovation management in drug delivery research.Entities:
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Year: 2014 PMID: 25182125 PMCID: PMC4161884 DOI: 10.1186/s12967-014-0227-9
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Figure 1Mapping innovation and knowledge translation process on liposomal doxorubicin. The figure shows a network of inter-citations, where the nodes are research papers on liposomal doxorubicins, which belong to 20% of the most cited articles in the field. The vertices of the network are the citations between them. The form of the nodes is dependent on the cluster they belong to. The network names are given by the GO or MeSH terms that distinguish them from the others.
Top MeSh and GO terms associated with papers belonging to each of the eight clusters
|
|
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|---|---|
| Cluster 1 | |
| Doxorubicin | 58 |
| Liposomes | 58 |
| Pharmaceutical preparations | 45 |
| Animals | 38 |
| Neoplasms | 32 |
| Cluster 2 | |
| Doxorubicin | 57 |
| Liposomes | 57 |
| Humans | 50 |
| Patients | 44 |
| Female | 44 |
| Neoplasms | 41 |
| Adult | 35 |
| Middle aged | 35 |
| Therapeutics | 30 |
| Aged | 29 |
| Drug carriers | 29 |
| Cluster 3 | |
| Liposomes | 50 |
| Doxorubicin | 48 |
| Cells | 40 |
| cell | 40 |
| Animals | 38 |
| Pharmaceutical preparations | 37 |
| Mice | 36 |
| Humans | 35 |
| Neoplasms | 31 |
| Cluster 4 | |
| Liposomes | 33 |
| Doxorubicin | 30 |
| Pharmaceutical preparations | 30 |
| Neoplasms | 27 |
| Animals | 27 |
| Therapeutics | 24 |
| Drug Carriers | 22 |
| Mice | 22 |
| Humans | 19 |
| Cluster 5 | |
| Doxorubicin | 34 |
| Liposomes | 34 |
| Pharmaceutical preparations | 28 |
| Animals | 25 |
| Neoplasms | 25 |
| Temperature | 18 |
| Cluster 6 | |
| Doxorubicin | 16 |
| Humans | 16 |
| Liposomes | 15 |
| Patients | 14 |
| Male | 14 |
| Middle aged | 12 |
| Aged | 12 |
| Female | 12 |
| Treatment outcome | 11 |
| Polyethylene glycols | 9 |
| Therapeutics | 9 |
| Adult | 9 |
| Cluster 7 | |
| Doxorubicin | 10 |
| Liposomes | 10 |
| Patients | 9 |
| Humans | 9 |
| Female | 8 |
| Breast neoplasms | 8 |
| Survival | 7 |
| Neoplasms | 7 |
| Therapeutics | 7 |
| Aged | 7 |
| Adult | 6 |
| Middle aged | 6 |
| Safety | 6 |
| Cluster 8 | |
| Doxorubicin | 9 |
| Liposomes | 9 |
| Patients | 9 |
| Recurrence | 9 |
| Survival | 9 |
| Adult | 9 |
| Aged | 9 |
| Female | 9 |
| Humans | 9 |
| Middle aged | 9 |
| Ovarian neoplasms | 9 |
| Platinum | 8 |
| Polyethylene glycols | 8 |
| Disease-free survival | 7 |
| Neoplasms | 7 |
| Safety | 6 |
| Aged, 80 and over | 6 |
Manuscripts with the highest degree of hierarchy within each of the clusters
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|
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|---|---|---|---|
| Cluster 1 | |||
| The first by degree | Mayer, L D, Tai, L C, Ko, D S, Masin, D, Ginsberg, R S, Cullis, P R, Bally, M B | Cancer research (Cancer Res), Vol. 49 (21): 5922–30, 1989 | Influence of vesicle size, lipid composition, and drug-to-lipid ratio on the biological activity of liposomal doxorubicin in mice. |
| Second by degree | Mayer, L D, Tai, L C, Bally, M B, Mitilenes, G N, Ginsberg, R S, Cullis, P R | Biochimica et biophysica acta (Biochim Biophys Acta), Vol. 1025 (2): 143–51, 1990 | Characterization of liposomal systems containing doxorubicin entrapped in response to pH gradients. |
| Second by degree | Herman, E H, Rahman, A, Ferrans, V J, Vick, J A, Schein, P S | Cancer research (Cancer Res), Vol. 43 (11): 5427–32, 1983 | Prevention of chronic doxorubicin cardiotoxicity in beagles by liposomal encapsulation. |
| The first by hierarchy | Forssen, E A, Tökès, Z A | Proceedings of the National Academy of Sciences of the United States of America (P Natl Acad Sci Usa), Vol. 78 (3): 1873–7, 1981 | Use of anionic liposomes for the reduction of chronic doxorubicin-induced cardiotoxicity. |
| Cluster 2 | |||
| The first by degree | Muggia, F M, Hainsworth, J D, Jeffers, S, Miller, P, Groshen, S, Tan, M, Roman, L, Uziely, B, Muderspach, L, Garcia, A, Burnett, A, Greco, F A, Morrow, C P, Paradiso, L J, Liang, L J . | Journal of clinical oncology: official journal of the American Society of Clinical Oncology (J Clin Oncol), Vol. 15 (3): 987–93, 1997 | Phase II study of liposomal doxorubicin in refractory ovarian cancer: antitumor activity and toxicity modification by liposomal encapsulation. |
| Second by degree and first by hierarchy | Gabizon, A, Catane, R, Uziely, B, Kaufman, B, Safra, T, Cohen, R, Martin, F, Huang, A, Barenholz, Y | Cancer research (Cancer Res), Vol. 54 (4): 987–92, 1994 | Prolonged circulation time and enhanced accumulation in malignant exudates of doxorubicin encapsulated in polyethylene-glycol coated liposomes. |
| Second by degree | Uziely, B, Jeffers, S, Isacson, R, Kutsch, K, Wei-Tsao, D, Yehoshua, Z, Libson, E, Muggia, F M, Gabizon, A | Journal of clinical oncology : official journal of the American Society of Clinical Oncology (J Clin Oncol), Vol. 13 (7): 1777–85, 1995 | Liposomal doxorubicin: antitumor activity and unique toxicities during two complementary phase I studies. |
| Cluster 4 | |||
| The first by degree and first by hierarchy | Papahadjopoulos, D, Allen, T M, Gabizon, A, Mayhew, E, Matthay, K, Huang, S K, Lee, K D, Woodle, M C, Lasic, D D, Redemann, C | Proceedings of the National Academy of Sciences of the United States of America (P Natl Acad Sci Usa), Vol. 88 (24): 11460–4, 1991 | Sterically stabilized liposomes: improvements in pharmacokinetics and antitumor therapeutic efficacy. |
| Second by degree | Vaage, J, Mayhew, E, Lasic, D, Martin, F | International journal of cancer. (Int J Cancer), Vol. 51 (6): 942–8, 1992 | Therapy of primary and metastatic mouse mammary carcinomas with doxorubicin encapsulated in long circulating liposomes. |
| Cluster 3 | |||
| The first by degree | ElBayoumi, Tamer A, Torchilin, Vladimir P | Clinical cancer research : an official journal of the American Association for Cancer Research (Clin Cancer Res), Vol. 15 (6): 1973–80, 2009 | Tumor-targeted nanomedicines: enhanced antitumor efficacy in vivo of doxorubicin-loaded, long-circulating liposomes modified with cancer-specific monoclonal antibody. |
| Second by degree | Garde, Seema V, Forté, André J, Ge, Michael, Lepekhin, Eugene A, Panchal, Chandra J, Rabbani, Shafaat A, Wu, Jinzi J | Anti-cancer drugs (Anti-cancer Drug Des), Vol. 18 (10): 1189–200, 2007 | Binding and internalization of NGR-peptide-targeted liposomal doxorubicin (TVT-DOX) in CD13-expressing cells and its antitumor effects. |
| The first by hierarchy | Lee, R J, Low, P S | Biochimica et biophysica acta (Biochim Biophys Acta), Vol. 1233 (2): 134–44, 1995 | Folate-mediated tumor cell targeting of liposome-entrapped doxorubicin in vitro. |
| Cluster 5 | |||
| The first by degree | Kong, G, Anyarambhatla, G, Petros, W P, Braun, R D, Colvin, O M, Needham, D, Dewhirst, M W | Cancer research (Cancer Res), Vol. 60 (24): 6950–7, 2000 | Efficacy of liposomes and hyperthermia in a human tumor xenograft model: importance of triggered drug release. |
| Second by degree | Needham, D, Anyarambhatla, G, Kong, G, Dewhirst, M W | Cancer research (Cancer Res), Vol. 60 (5): 1197–201, 2000 | A new temperature-sensitive liposome for use with mild hyperthermia: characterization and testing in a human tumor xenograft model. |
| The first by hierarchy | Mayhew, E G, Goldrosen, M H, Vaage, J, Rustum, Y M | Journal of the National Cancer Institute (J Natl Cancer I), Vol. 78 (4): 707–13, 1987 | Effects of liposome-entrapped doxorubicin on liver metastases of mouse colon carcinomas 26 and 38. |
| Cluster 6 | |||
| The first by degree and first by hierarchy | Northfelt, D W, Martin, F J, Working, P, Volberding, P A, Russell, J, Newman, M, Amantea, M A, Kaplan, L D | Journal of clinical pharmacology (J Clin Pharmacol), Vol. 36 (1): 55–63, 1996 | Doxorubicin encapsulated in liposomes containing surface-bound polyethylene glycol: pharmacokinetics, tumor localization, and safety in patients with AIDS-related Kaposi's sarcoma. |
| Second by degree | Hussein, Mohamad A, Wood, Laura, Hsi, Eric, Srkalovic, Gordan, Karam, MaryAnn, Elson, Paul, Bukowski, Ronald M | Cancer, Vol. 95 (10): 2160–8, 2002 | A Phase II trial of pegylated liposomal doxorubicin, vincristine, and reduced-dose dexamethasone combination therapy in newly diagnosed multiple myeloma patients. |
| Cluster 7 | |||
| The first by degree | Batist, G, Ramakrishnan, G, Rao, C S, Chandrasekharan, A, Gutheil, J, Guthrie, T, Shah, P, Khojasteh, A, Nair, M K, Hoelzer, K, Tkaczuk, K, Park, Y C, Lee, L W . | Journal of clinical oncology: official journal of the American Society of Clinical Oncology (J Clin Oncol), Vol. 19 (5): 1444–54, 2001 | Reduced cardiotoxicity and preserved antitumor efficacy of liposome-encapsulated doxorubicin and cyclophosphamide compared with conventional doxorubicin and cyclophosphamide in a randomized, multicenter trial of metastatic breast cancer. |
| Second by degree | Harris, Lyndsay, Batist, Gerald, Belt, Robert, Rovira, Douglas, Navari, Rudolph, Azarnia, Nozar, Welles, Lauri, Winer, Eric, TLC D-99 Study Group . | Cancer, Vol. 94 (1): 25–36, 2002 | Liposome-encapsulated doxorubicin compared with conventional doxorubicin in a randomized multicenter trial as first-line therapy of metastatic breast carcinoma. |
| The first by hierarchy | Balazsovits JA, Mayer LD, Bally MB, Cullis PR, McDonell M, Ginsberg RS, Falk RE. | Cancer Chemother Pharmacol. 1989;23(2):81–6. | Analysis of the effect of liposome encapsulation on the vesicant properties, acute and cardiac toxicities, and antitumor efficacy of doxorubicin. |
| Cluster 8 | |||
| The first by degree and first by hierarchy | Gordon AN, Fleagle JT, Guthrie D, Parkin DE, Gore ME, Lacave AJ. | J Clin Oncol. 2001 Jul 15;19(14):3312–22. | Recurrent epithelial ovarian carcinoma: a randomized phase III study of pegylated liposomal doxorubicin versus topotecan. |
| Second by degree | Gordon, Alan N, Tonda, Margaret, Sun, Steven, Rackoff, Wayne, Doxil Study 30–49 Investigators | Gynecologic oncology (Gynecol Oncol), Vol. 95 (1): 1–8, 2004 | Long-term survival advantage for women treated with pegylated liposomal doxorubicin compared with topotecan in a phase 3 randomized study of recurrent and refractory epithelial ovarian cancer |
Papers with the highest hierarchy are the common ancestors of the documents of each cluster. Effective degree is the number of weighted connections to other papers (give a idea about how much connected is a paper to others highly connected documents of the network). Sometimes, the same paper has the highest hierarchy and most effective degree in a cluster.
Figure 2Network clusters which graphically summarizes the process of translation of knowledge and innovation on the liposomal doxorubicin. Each node represents one of 8 clusters, the size depends on the number of documents that constitute them. The thickness of the vertices is based on the total number of citations between each cluster, the vertex are labeled with these numbers.
Main institution by their number of papers in each cluster
| Cluster 1 | Hadassah Medical Organization, Israel. | 6 |
| British Columbia Cancer Agency, Canada. | 5 | |
| Georgetown University, USA. | 5 | |
| Hiroshima University, Japan. | 3 | |
| University of British Columbia, Canada. | 3 | |
| No information | 14 | |
| Cluster 2 | University of Southern California, USA. | 5 |
| Hadassah Medical Organization, Israel. | 5 | |
| New York University, USA. | 3 | |
| SEQUUS Pharmaceuticals, Inc., Menlo Park, USA. | 3 | |
| University of Alberta, Canada. | 3 | |
| Cluster 3 | University of Alberta, Canada. | 10 |
| Hadassah Medical Organization, Israel. | 4 | |
| Northeastern University, USA. | 3 | |
| Peking University, China. | 3 | |
| Cluster 4 | Hadassah Medical Organization, Israel. | 10 |
| Roswell Park Cancer Institute, USA. | 8 | |
| Cluster 5 | Duke University, USA. | 7 |
| Harvard Medical School, USA. | 6 | |
| University of California-San Francisco, USA | 3 | |
| Cluster 6 | Cleveland Clinic Foundation, USA. | 3 |
| Cluster 7 and 8 | All institution have just one paper in theses clusters | 1 |
We only consider the corresponding address of the papers.