Literature DB >> 25179374

Loss of 5-hydroxymethylcytosine in cancer: cause or consequence?

Gabriella Ficz1, John G Gribben2.   

Abstract

Discovery of the enzymatic activity that catalyses oxidation of 5-methylcytosine (5mC) to generate 5-hydroxymethylcytosine (5hmC) mediated by the MLL (KMT2A) fusion partner TET1 has sparked intense research to understand the role this new DNA modification has in cancer. An unambiguous picture has emerged where tumours are depleted of 5hmC compared to corresponding normal tissue, but it is not known whether lack of 5hmC is a cause or a consequence of tumourigenesis. Experimental data reveals a dual tumour-suppressive and oncogenic role for TET proteins. Tet2 mutations are drivers in haematological malignancies but Tet1 had an oncogenic role in MLL-rearranged leukaemia, where Tet1 is overexpressed. Overexpression of Tet2 in melanoma cells re-established the 5hmC landscape and suppressed cancer progression but inhibiting Tet1 in non-transformed cells did not initiate cellular transformation. In this review we summarise recent findings that have shaped the current understanding on the role 5hmC plays in cancer.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  5-Hydroxymethylcytosine; DNA methylation; Epigenetics and cancer; Reprogramming

Mesh:

Substances:

Year:  2014        PMID: 25179374      PMCID: PMC4566966          DOI: 10.1016/j.ygeno.2014.08.017

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  75 in total

1.  TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23).

Authors:  R B Lorsbach; J Moore; S Mathew; S C Raimondi; S T Mukatira; J R Downing
Journal:  Leukemia       Date:  2003-03       Impact factor: 11.528

2.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

3.  Dnmt3a is essential for hematopoietic stem cell differentiation.

Authors:  Grant A Challen; Deqiang Sun; Mira Jeong; Min Luo; Jaroslav Jelinek; Jonathan S Berg; Christoph Bock; Aparna Vasanthakumar; Hongcang Gu; Yuanxin Xi; Shoudan Liang; Yue Lu; Gretchen J Darlington; Alexander Meissner; Jean-Pierre J Issa; Lucy A Godley; Wei Li; Margaret A Goodell
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330

Review 4.  TET family proteins and their role in stem cell differentiation and transformation.

Authors:  Luisa Cimmino; Omar Abdel-Wahab; Ross L Levine; Iannis Aifantis
Journal:  Cell Stem Cell       Date:  2011-09-02       Impact factor: 24.633

5.  Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Authors:  Wei Xu; Hui Yang; Ying Liu; Ying Yang; Ping Wang; Se-Hee Kim; Shinsuke Ito; Chen Yang; Pu Wang; Meng-Tao Xiao; Li-xia Liu; Wen-qing Jiang; Jing Liu; Jin-ye Zhang; Bin Wang; Stephen Frye; Yi Zhang; Yan-hui Xu; Qun-ying Lei; Kun-Liang Guan; Shi-min Zhao; Yue Xiong
Journal:  Cancer Cell       Date:  2011-01-18       Impact factor: 38.585

6.  Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.

Authors:  Carina Frauer; Thomas Hoffmann; Sebastian Bultmann; Valentina Casa; M Cristina Cardoso; Iris Antes; Heinrich Leonhardt
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

7.  DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells.

Authors:  Jennifer J Trowbridge; Jonathan W Snow; Jonghwan Kim; Stuart H Orkin
Journal:  Cell Stem Cell       Date:  2009-10-02       Impact factor: 24.633

Review 8.  5-hydroxymethylcytosine profiling as an indicator of cellular state.

Authors:  Alexander Laird; John P Thomson; David J Harrison; Richard R Meehan
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

9.  Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

Authors:  Sanchari Bhattacharyya; Yiting Yu; Masako Suzuki; Nathaniel Campbell; Jozef Mazdo; Aparna Vasanthakumar; Tushar D Bhagat; Sangeeta Nischal; Maximilian Christopeit; Samir Parekh; Ulrich Steidl; Lucy Godley; Anirban Maitra; John M Greally; Amit Verma
Journal:  Nucleic Acids Res       Date:  2013-07-16       Impact factor: 16.971

10.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

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  46 in total

1.  p53-Suppressed Oncogene TET1 Prevents Cellular Aging in Lung Cancer.

Authors:  Piotr T Filipczak; Shuguang Leng; Carmen S Tellez; Kieu C Do; Marcie J Grimes; Cynthia L Thomas; Stephanie R Walton-Filipczak; Maria A Picchi; Steven A Belinsky
Journal:  Cancer Res       Date:  2019-01-08       Impact factor: 12.701

2.  TET1 reprograms the epithelial ovarian cancer epigenome and reveals casein kinase 2α as a therapeutic target.

Authors:  Lin-Yu Chen; Rui-Lan Huang; Michael Wy Chan; Pearlly S Yan; Tien-Shuo Huang; Ren-Chin Wu; Yohan Suryo Rahmanto; Po-Hsuan Su; Yu-Chun Weng; Jian-Liang Chou; Tai-Kuang Chao; Yu-Chi Wang; Ie-Ming Shih; Hung-Cheng Lai
Journal:  J Pathol       Date:  2019-04-23       Impact factor: 7.996

3.  Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays.

Authors:  Ze Zhang; Min Kyung Lee; Laurent Perreard; Karl T Kelsey; Brock C Christensen; Lucas A Salas
Journal:  Epigenomics       Date:  2022-01-14       Impact factor: 4.778

4.  Bisulfite-free and single-nucleotide resolution sequencing of DNA epigenetic modification of 5-hydroxymethylcytosine using engineered deaminase.

Authors:  Neng-Bin Xie; Min Wang; Tong-Tong Ji; Xia Guo; Jiang-Hui Ding; Bi-Feng Yuan; Yu-Qi Feng
Journal:  Chem Sci       Date:  2022-05-26       Impact factor: 9.969

5.  Solid-state nanopore analysis of human genomic DNA shows unaltered global 5-hydroxymethylcytosine content associated with early-stage breast cancer.

Authors:  Osama K Zahid; Felipe Rivas; Fanny Wang; Komal Sethi; Katherine Reiss; Samuel Bearden; Adam R Hall
Journal:  Nanomedicine       Date:  2021-04-24       Impact factor: 6.096

6.  DNA immunoprecipitation semiconductor sequencing (DIP-SC-seq) as a rapid method to generate genome wide epigenetic signatures.

Authors:  John P Thomson; Angie Fawkes; Raffaele Ottaviano; Jennifer M Hunter; Ruchi Shukla; Heidi K Mjoseng; Richard Clark; Audrey Coutts; Lee Murphy; Richard R Meehan
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

7.  Dynamic interplay between locus-specific DNA methylation and hydroxymethylation regulates distinct biological pathways in prostate carcinogenesis.

Authors:  Shivani N Kamdar; Linh T Ho; Ken J Kron; Ruth Isserlin; Theodorus van der Kwast; Alexandre R Zlotta; Neil E Fleshner; Gary Bader; Bharati Bapat
Journal:  Clin Epigenetics       Date:  2016-03-15       Impact factor: 6.551

8.  Loss of Tet1-Associated 5-Hydroxymethylcytosine Is Concomitant with Aberrant Promoter Hypermethylation in Liver Cancer.

Authors:  John P Thomson; Raffaele Ottaviano; Elif B Unterberger; Harri Lempiäinen; Arne Muller; Remi Terranova; Robert S Illingworth; Shaun Webb; Alastair R W Kerr; Marcus J Lyall; Amanda J Drake; C Roland Wolf; Jonathan G Moggs; Michael Schwarz; Richard R Meehan
Journal:  Cancer Res       Date:  2016-04-06       Impact factor: 12.701

9.  Retracted Article: Divergent synthesis of 5-substituted pyrimidine 2'-deoxynucleosides and their incorporation into oligodeoxynucleotides for the survey of uracil DNA glycosylases.

Authors:  Ai Tran; Song Zheng; Dawanna S White; Alyson M Curry; Yana Cen
Journal:  Chem Sci       Date:  2020-10-07       Impact factor: 9.825

10.  Enhanced MAPK signaling drives ETS1-mediated induction of miR-29b leading to downregulation of TET1 and changes in epigenetic modifications in a subset of lung SCC.

Authors:  M A Taylor; M Wappett; O Delpuech; H Brown; C M Chresta
Journal:  Oncogene       Date:  2016-01-18       Impact factor: 9.867

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