Literature DB >> 25179344

Retracted: Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models

William C Hwang1, James W Golden, Jaime Pascual, Dong Xu, Anton Cheltsov, Adam Godzik.   

Abstract

Nitrogen fixation is an important process that converts atmospheric gaseous nitrogen, a form plants cannot utilize, into ammonia that can be easily assimilated. Large serine recombinase XisF (fdxN element site-specific recombinase), together with controlling factors XisH and XisI, plays a critical role in the expression of nitrogen fixation genes of certain Anabaena and Nostoc species of cyanobacteria. All three proteins are required to excise the fdxN DNA element from the chromosome in differentiating heterocysts for the expression of nitrogen fixation related genes. We report the first crystal structures of XisH and XisI proteins, both adopting novel protein folds. Based on the analysis of their sequences and structures, we propose that XisH and XisI proteins function as endonucleases and recombination directionality factors (RDFs), respectively.
Copyright © 2014 Wiley Periodicals, Inc., a Wiley company.

Keywords:  endonuclease; excisionase; fdxN element; recombinase; recombination directionality factor

Year:  2014        PMID: 25179344     DOI: 10.1002/prot.24679

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  51 in total

1.  Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.

Authors:  T Nishino; K Komori; D Tsuchiya; Y Ishino; K Morikawa
Journal:  Structure       Date:  2001-03-07       Impact factor: 5.006

Review 2.  Diversity in the serine recombinases.

Authors:  Margaret C M Smith; Helena M Thorpe
Journal:  Mol Microbiol       Date:  2002-04       Impact factor: 3.501

3.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

4.  Integration and excision by the large serine recombinase phiRv1 integrase.

Authors:  Lori A Bibb; Maria I Hancox; Graham F Hatfull
Journal:  Mol Microbiol       Date:  2005-03       Impact factor: 3.501

5.  Similarities and differences among 105 members of the Int family of site-specific recombinases.

Authors:  S E Nunes-Düby; H J Kwon; R S Tirumalai; T Ellenberger; A Landy
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

6.  Structural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems.

Authors:  Robert P Morse; Kiel C Nikolakakis; Julia L E Willett; Elias Gerrick; David A Low; Christopher S Hayes; Celia W Goulding
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

7.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 8.  Frataxin: a protein in search for a function.

Authors:  Annalisa Pastore; Helene Puccio
Journal:  J Neurochem       Date:  2013-08       Impact factor: 5.372

9.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  A motif in the C-terminal domain of phiC31 integrase controls the directionality of recombination.

Authors:  Paul A Rowley; Matthew C A Smith; Ellen Younger; Margaret C M Smith
Journal:  Nucleic Acids Res       Date:  2008-05-23       Impact factor: 16.971

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