Literature DB >> 25175010

Review of methods to assign the nuclear magnetic resonance peaks of reductively methylated proteins.

Kevin J Roberson1, Megan A Macnaughtan2.   

Abstract

Reductive methylation of lysyl side-chain amines has been a successful tool in the advancement of high-resolution structural biology. The utility of this method has continuously gained ground as a protein chemical modification, first as a tool to aid protein crystallization and later as a probe in protein nuclear magnetic resonance (NMR) spectroscopy. As an isotope-labeling strategy for NMR studies, reductive methylation has contributed to the study of protein-protein interactions and global conformational changes. Although more detailed structural studies using this labeling strategy are possible, the hurdle of assigning the NMR peaks to the corresponding reductively methylated amine hinders its use. In this review, we discuss and compare strategies used to assign the NMR peaks of reductively methylated protein amines.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemical modification; Dimethyllysine; Isotopic labeling; Lysozyme; Reductive methylation

Mesh:

Substances:

Year:  2014        PMID: 25175010      PMCID: PMC4252242          DOI: 10.1016/j.ab.2014.08.024

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  34 in total

1.  Utilization of lysine ¹³C-methylation NMR for protein-protein interaction studies.

Authors:  Yoshikazu Hattori; Kyoko Furuita; Izuru Ohki; Takahisa Ikegami; Harumi Fukada; Masahiro Shirakawa; Toshimichi Fujiwara; Chojiro Kojima
Journal:  J Biomol NMR       Date:  2012-12-06       Impact factor: 2.835

2.  Enhanced detection of ubiquitin isopeptides using reductive methylation.

Authors:  Navin Chicooree; Yvonne Connolly; Chong-Teik Tan; Angeliki Malliri; Yaoyong Li; Duncan L Smith; John R Griffiths
Journal:  J Am Soc Mass Spectrom       Date:  2013-01-30       Impact factor: 3.109

3.  Chemical modification of a variant of human MIP-1alpha; implications for dimer structure.

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Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

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Authors:  J H Bradbury; L R Brown
Journal:  Eur J Biochem       Date:  1973-12-17

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Authors:  R H Rice; G E Means
Journal:  J Biol Chem       Date:  1971-02-10       Impact factor: 5.157

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Authors:  G E Means; R E Feeney
Journal:  Biochemistry       Date:  1968-06       Impact factor: 3.162

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Authors:  N Jentoft; D G Dearborn
Journal:  J Biol Chem       Date:  1979-06-10       Impact factor: 5.157

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Journal:  Eur J Biochem       Date:  1975-05

9.  A mass spectrometry-based plasma protein panel targeting the tumor microenvironment in patients with breast cancer.

Authors:  Alejandro Cohen; Edwin Wang; Kenneth A Chisholm; Ripsik Kostyleva; Maureen O'Connor-McCourt; Devanand M Pinto
Journal:  J Proteomics       Date:  2012-11-20       Impact factor: 4.044

10.  Methods to identify the NMR resonances of the ¹³C-dimethyl N-terminal amine on reductively methylated proteins.

Authors:  Kevin J Roberson; Pamlea N Brady; Michelle M Sweeney; Megan A Macnaughtan
Journal:  J Vis Exp       Date:  2013-12-12       Impact factor: 1.355

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  3 in total

1.  13C NMR detects conformational change in the 100-kD membrane transporter ClC-ec1.

Authors:  Sherwin J Abraham; Ricky C Cheng; Thomas A Chew; Chandra M Khantwal; Corey W Liu; Shimei Gong; Robert K Nakamoto; Merritt Maduke
Journal:  J Biomol NMR       Date:  2015-01-29       Impact factor: 2.835

2.  Electrostatic Interactions and Protein Competition Reveal a Dynamic Surface in Gold Nanoparticle-Protein Adsorption.

Authors:  Ailin Wang; Y Randika Perera; Mackenzie B Davidson; Nicholas C Fitzkee
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2016-10-05       Impact factor: 4.126

3.  Evaluation of colorimetric assays for analyzing reductively methylated proteins: Biases and mechanistic insights.

Authors:  Pamlea N Brady; Megan A Macnaughtan
Journal:  Anal Biochem       Date:  2015-09-03       Impact factor: 3.365

  3 in total

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