Literature DB >> 25173194

Nine additional complete genome sequences of HCV genotype 6 from Vietnam including new subtypes 6xb and 6xc.

Chunhua Li1, Van H Pham2, Kenji Abe3, Ling Lu4.   

Abstract

We completely sequenced nine HCV-6 variants from Vietnam. They are grouped into six lineages beyond the 24 assigned subtypes, 6a-6xa, and 14 unclassified lineages that have been recently described with full-length genomes. Co-analysis with reference sequences in the NS5B region identified additional 22 such lineages, which made the total taxonomic number of HCV-6 increased to 66 that might be recognized at the subtype level. Because two of these six lineages revealed in this study each had >3 epidemiologically unlinked isolates identified, we proposed to assign them new subtypes 6xb and 6xc in following the eXtended format recently recommended in the expanded HCV nomenclature.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Full-length genome; Genotype 6; HCV; Sequence

Mesh:

Year:  2014        PMID: 25173194      PMCID: PMC4346185          DOI: 10.1016/j.virol.2014.08.006

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  30 in total

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Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

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Journal:  Hepatology       Date:  2005-10       Impact factor: 17.425

4.  Identification of numerous hepatitis C virus genotypes in Montreal, Canada.

Authors:  L Bernier; B Willems; G Delage; D G Murphy
Journal:  J Clin Microbiol       Date:  1996-11       Impact factor: 5.948

5.  Molecular characterization of Hepatitis C virus (HCV) core region in HCV-infected Thai blood donors.

Authors:  A Theamboonlers; T Chinchai; K Bedi; P Jantarasamee; M Sripontong; Y Poovorawan
Journal:  Acta Virol       Date:  2002       Impact factor: 1.162

6.  Risk factors, genotype 6 prevalence, and clinical characteristics of chronic hepatitis C in Southeast Asian Americans.

Authors:  Nghia H Nguyen; Philip Vutien; Huy N Trinh; Ruel T Garcia; Long H Nguyen; Huy A Nguyen; Khanh K Nguyen; Mindie H Nguyen
Journal:  Hepatol Int       Date:  2010-04-09       Impact factor: 6.047

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Journal:  Transfusion       Date:  2004-10       Impact factor: 3.157

8.  Development and evaluation of an automated hepatitis C virus NS5B sequence-based subtyping assay.

Authors:  Diana Koletzki; Stéphanie Dumont; Hans Vermeiren; Bart Fevery; Pieter De Smet; Lieven J Stuyver
Journal:  Clin Chem Lab Med       Date:  2010-08       Impact factor: 3.694

9.  Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource.

Authors:  Donald B Smith; Jens Bukh; Carla Kuiken; A Scott Muerhoff; Charles M Rice; Jack T Stapleton; Peter Simmonds
Journal:  Hepatology       Date:  2014-01       Impact factor: 17.425

Review 10.  Genetic diversity and evolution of hepatitis C virus--15 years on.

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Journal:  J Gen Virol       Date:  2004-11       Impact factor: 3.891

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1.  Impact of Preexisting Hepatitis C Virus Genotype 6 NS3, NS5A, and NS5B Polymorphisms on the In Vitro Potency of Direct-Acting Antiviral Agents.

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Journal:  Antimicrob Agents Chemother       Date:  2019-03-27       Impact factor: 5.191

2.  An expanded taxonomy of hepatitis C virus genotype 6: Characterization of 22 new full-length viral genomes.

Authors:  Chunhua Li; Eleanor Barnes; Paul N Newton; Yongshui Fu; Manivanh Vongsouvath; Paul Klenerman; Hiroaki Okamoto; Kenji Abe; Oliver G Pybus; Ling Lu
Journal:  Virology       Date:  2015-01-10       Impact factor: 3.616

Review 3.  Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review.

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Journal:  BMC Infect Dis       Date:  2017-04-11       Impact factor: 3.090

4.  Differential prevalence and geographic distribution of hepatitis C virus genotypes in acute and chronic hepatitis C patients in Vietnam.

Authors:  Chau Le Ngoc; Thanh Tran Thi Thanh; Phuong Tran Thi Lan; Trinh Nguyen Mai; Trang Nguyen Hoa; Ngoc Nghiem My; Tan Le Van; Hung Le Manh; Phuong Le Thanh; Chau Nguyen Van Vinh; Guy Thwaites; Graham Cooke; Gabrielle M Heilek; Cecilia Shikuma; Thuy Le; Stephen Baker; Motiur Rahman
Journal:  PLoS One       Date:  2019-03-13       Impact factor: 3.240

  4 in total

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