Literature DB >> 25172207

Decoupling function and anatomy in atlases of functional connectivity patterns: language mapping in tumor patients.

Georg Langs1, Andrew Sweet2, Danial Lashkari3, Yanmei Tie4, Laura Rigolo5, Alexandra J Golby6, Polina Golland7.   

Abstract

In this paper we construct an atlas that summarizes functional connectivity characteristics of a cognitive process from a population of individuals. The atlas encodes functional connectivity structure in a low-dimensional embedding space that is derived from a diffusion process on a graph that represents correlations of fMRI time courses. The functional atlas is decoupled from the anatomical space, and thus can represent functional networks with variable spatial distribution in a population. In practice the atlas is represented by a common prior distribution for the embedded fMRI signals of all subjects. We derive an algorithm for fitting this generative model to the observed data in a population. Our results in a language fMRI study demonstrate that the method identifies coherent and functionally equivalent regions across subjects. The method also successfully maps functional networks from a healthy population used as a training set to individuals whose language networks are affected by tumors.
Copyright © 2014. Published by Elsevier Inc.

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Year:  2014        PMID: 25172207      PMCID: PMC4401430          DOI: 10.1016/j.neuroimage.2014.08.029

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  43 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

2.  Joint generative model for fMRI/DWI and its application to population studies.

Authors:  Archana Venkataraman; Yogesh Rathi; Marek Kubicki; Carl-Fredrik Westin; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI.

Authors:  Yashar Behzadi; Khaled Restom; Joy Liau; Thomas T Liu
Journal:  Neuroimage       Date:  2007-05-03       Impact factor: 6.556

4.  Bayesian analysis of neuroimaging data in FSL.

Authors:  Mark W Woolrich; Saad Jbabdi; Brian Patenaude; Michael Chappell; Salima Makni; Timothy Behrens; Christian Beckmann; Mark Jenkinson; Stephen M Smith
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

5.  Functional topography: multidimensional scaling and functional connectivity in the brain.

Authors:  K J Friston; C D Frith; P Fletcher; P F Liddle; R S Frackowiak
Journal:  Cereb Cortex       Date:  1996 Mar-Apr       Impact factor: 5.357

6.  Cerebral reorganization as a function of linguistic recovery in children: An fMRI study.

Authors:  Odelia Elkana; Ram Frost; Uri Kramer; Dafna Ben-Bashat; Talma Hendler; David Schmidt; Avraham Schweiger
Journal:  Cortex       Date:  2009-12-29       Impact factor: 4.027

7.  Preoperative mapping of cortical language areas in adult brain tumour patients using PET and individual non-normalised SPM analyses.

Authors:  Philipp T Meyer; Laszlo Sturz; Mathias Schreckenberger; Uwe Spetzger; Georg F Meyer; Keyvan S Setani; Osama Sabri; Udalrich Buell
Journal:  Eur J Nucl Med Mol Imaging       Date:  2003-05-14       Impact factor: 9.236

8.  Function-based intersubject alignment of human cortical anatomy.

Authors:  Mert R Sabuncu; Benjamin D Singer; Bryan Conroy; Ronald E Bryan; Peter J Ramadge; James V Haxby
Journal:  Cereb Cortex       Date:  2010-01       Impact factor: 5.357

9.  Training induces changes in white-matter architecture.

Authors:  Jan Scholz; Miriam C Klein; Timothy E J Behrens; Heidi Johansen-Berg
Journal:  Nat Neurosci       Date:  2009-10-11       Impact factor: 24.884

10.  Uncovering intrinsic modular organization of spontaneous brain activity in humans.

Authors:  Yong He; Jinhui Wang; Liang Wang; Zhang J Chen; Chaogan Yan; Hong Yang; Hehan Tang; Chaozhe Zhu; Qiyong Gong; Yufeng Zang; Alan C Evans
Journal:  PLoS One       Date:  2009-04-21       Impact factor: 3.240

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  12 in total

1.  Identifying Shared Brain Networks in Individuals by Decoupling Functional and Anatomical Variability.

Authors:  Georg Langs; Danhong Wang; Polina Golland; Sophia Mueller; Ruiqi Pan; Mert R Sabuncu; Wei Sun; Kuncheng Li; Hesheng Liu
Journal:  Cereb Cortex       Date:  2015-09-01       Impact factor: 5.357

2.  Predicting Activation Across Individuals with Resting-State Functional Connectivity Based Multi-Atlas Label Fusion.

Authors:  Georg Langs; Polina Golland; Satrajit S Ghosh
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-20

3.  Diffeomorphic functional brain surface alignment: Functional demons.

Authors:  Karl-Heinz Nenning; Hesheng Liu; Satrajit S Ghosh; Mert R Sabuncu; Ernst Schwartz; Georg Langs
Journal:  Neuroimage       Date:  2017-04-14       Impact factor: 6.556

Review 4.  Machine learning in neuroimaging: from research to clinical practice.

Authors:  Karl-Heinz Nenning; Georg Langs
Journal:  Radiologie (Heidelb)       Date:  2022-08-31

5.  Situating the default-mode network along a principal gradient of macroscale cortical organization.

Authors:  Daniel S Margulies; Satrajit S Ghosh; Alexandros Goulas; Marcel Falkiewicz; Julia M Huntenburg; Georg Langs; Gleb Bezgin; Simon B Eickhoff; F Xavier Castellanos; Michael Petrides; Elizabeth Jefferies; Jonathan Smallwood
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-18       Impact factor: 11.205

6.  Automated eloquent cortex localization in brain tumor patients using multi-task graph neural networks.

Authors:  Naresh Nandakumar; Komal Manzoor; Shruti Agarwal; Jay J Pillai; Sachin K Gujar; Haris I Sair; Archana Venkataraman
Journal:  Med Image Anal       Date:  2021-08-21       Impact factor: 13.828

7.  A computational model of shared fine-scale structure in the human connectome.

Authors:  J Swaroop Guntupalli; Ma Feilong; James V Haxby
Journal:  PLoS Comput Biol       Date:  2018-04-17       Impact factor: 4.475

8.  Are you thinking what I'm thinking? Synchronization of resting fMRI time-series across subjects.

Authors:  Anand A Joshi; Minqi Chong; Jian Li; Soyoung Choi; Richard M Leahy
Journal:  Neuroimage       Date:  2018-02-08       Impact factor: 6.556

Review 9.  Hyperalignment: Modeling shared information encoded in idiosyncratic cortical topographies.

Authors:  James V Haxby; J Swaroop Guntupalli; Samuel A Nastase; Ma Feilong
Journal:  Elife       Date:  2020-06-02       Impact factor: 8.140

10.  The impact of ischemic stroke on connectivity gradients.

Authors:  Şeyma Bayrak; Ahmed A Khalil; Kersten Villringer; Jochen B Fiebach; Arno Villringer; Daniel S Margulies; Smadar Ovadia-Caro
Journal:  Neuroimage Clin       Date:  2019-07-19       Impact factor: 4.881

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