Literature DB >> 25172020

Worms, bacteria, and micronutrients: an elegant model of our diet.

Lutfu Safak Yilmaz1, Albertha J M Walhout2.   

Abstract

Micronutrients are required in small proportions in a diet to carry out key metabolic roles for biomass and energy production. Humans receive micronutrients either directly from their diet or from gut microbiota that metabolize other nutrients. The nematode Caenorhabditis elegans and its bacterial diet provide a relatively simple and genetically tractable model to study both direct and microbe-mediated effects of micronutrients. Recently, this model has been used to gain insight into the relationship between micronutrients, physiology, and metabolism. In particular, two B-type vitamins, vitamin B12 and folate, have been studied in detail. Here we review how C. elegans and its bacterial diet provide a powerful interspecies systems biology model that facilitates the precise delineation of micronutrient effects and the mechanisms involved.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Caenorhabditis elegans; folate; gut microbiota; metabolism; micronutrients; vitamin B

Mesh:

Substances:

Year:  2014        PMID: 25172020      PMCID: PMC4399232          DOI: 10.1016/j.tig.2014.07.010

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  74 in total

Review 1.  The biology of aging: 1985-2010 and beyond.

Authors:  George M Martin
Journal:  FASEB J       Date:  2011-11       Impact factor: 5.191

2.  Variable dietary management of methylmalonic acidemia: metabolic and energetic correlations.

Authors:  Natalie S Hauser; Irini Manoli; Jennifer C Graf; Jennifer Sloan; Charles P Venditti
Journal:  Am J Clin Nutr       Date:  2010-11-03       Impact factor: 7.045

Review 3.  Cancer models in Caenorhabditis elegans.

Authors:  Natalia V Kirienko; Kumaran Mani; David S Fay
Journal:  Dev Dyn       Date:  2010-05       Impact factor: 3.780

Review 4.  Updating the mitochondrial free radical theory of aging: an integrated view, key aspects, and confounding concepts.

Authors:  Gustavo Barja
Journal:  Antioxid Redox Signal       Date:  2013-07-03       Impact factor: 8.401

5.  A conserved SREBP-1/phosphatidylcholine feedback circuit regulates lipogenesis in metazoans.

Authors:  Amy K Walker; René L Jacobs; Jennifer L Watts; Veerle Rottiers; Karen Jiang; Deirdre M Finnegan; Toshi Shioda; Malene Hansen; Fajun Yang; Lorissa J Niebergall; Dennis E Vance; Monika Tzoneva; Anne C Hart; Anders M Näär
Journal:  Cell       Date:  2011-10-27       Impact factor: 41.582

Review 6.  Gut bacterial microbiota and obesity.

Authors:  M Million; J-C Lagier; D Yahav; M Paul
Journal:  Clin Microbiol Infect       Date:  2013-03-02       Impact factor: 8.067

7.  Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

Authors:  Dmitry A Rodionov; Alexey G Vitreschak; Andrey A Mironov; Mikhail S Gelfand
Journal:  J Biol Chem       Date:  2003-07-17       Impact factor: 5.157

Review 8.  Influence of maternal folate status on human fetal growth parameters.

Authors:  Evelyne M van Uitert; Régine P M Steegers-Theunissen
Journal:  Mol Nutr Food Res       Date:  2012-12-04       Impact factor: 5.914

Review 9.  Vitamin C and lifespan in model organisms.

Authors:  K Pallauf; J K Bendall; C Scheiermann; K Watschinger; J Hoffmann; T Roeder; G Rimbach
Journal:  Food Chem Toxicol       Date:  2013-05-01       Impact factor: 6.023

10.  Altered bacterial metabolism, not coenzyme Q content, is responsible for the lifespan extension in Caenorhabditis elegans fed an Escherichia coli diet lacking coenzyme Q.

Authors:  Ryoichi Saiki; Adam L Lunceford; Tarra Bixler; Peter Dang; Wendy Lee; Satoru Furukawa; Pamela L Larsen; Catherine F Clarke
Journal:  Aging Cell       Date:  2008-02-11       Impact factor: 9.304

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  33 in total

Review 1.  Metabolic network modeling with model organisms.

Authors:  L Safak Yilmaz; Albertha Jm Walhout
Journal:  Curr Opin Chem Biol       Date:  2017-01-12       Impact factor: 8.822

2.  DNA damage in the elderly is associated with 5-MTHF levels: a pro-oxidant activity.

Authors:  Marília Baierle; Gabriela Göethel; Sabrina N Nascimento; Mariele F Charão; Angela M Moro; Natália Brucker; Elisa Sauer; Bruna Gauer; Caroline Souto; Juliano Durgante; Marcelo Dutra Arbo; Solange Cristina Garcia
Journal:  Toxicol Res (Camb)       Date:  2017-03-13       Impact factor: 3.524

3.  Modeling Host-Microbiome Interactions in Caenorhabditis elegans.

Authors:  Teklu K Gerbaba; Luke Green-Harrison; Andre G Buret
Journal:  J Nematol       Date:  2017-12       Impact factor: 1.402

4.  Lysosomal activity regulates Caenorhabditis elegans mitochondrial dynamics through vitamin B12 metabolism.

Authors:  Wei Wei; Gary Ruvkun
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-31       Impact factor: 11.205

5.  Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics.

Authors:  Aurian P García-González; Ashlyn D Ritter; Shaleen Shrestha; Erik C Andersen; L Safak Yilmaz; Albertha J M Walhout
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

6.  A Caenorhabditis elegans Genome-Scale Metabolic Network Model.

Authors:  L Safak Yilmaz; Albertha J M Walhout
Journal:  Cell Syst       Date:  2016-05-19       Impact factor: 10.304

7.  RNAi Interrogation of Dietary Modulation of Development, Metabolism, Behavior, and Aging in C. elegans.

Authors:  Rui Xiao; Lei Chun; Elizabeth A Ronan; David I Friedman; Jianfeng Liu; X Z Shawn Xu
Journal:  Cell Rep       Date:  2015-05-07       Impact factor: 9.423

8.  Dietary vitamin B12 regulates chemosensory receptor gene expression via the MEF2 transcription factor in Caenorhabditis elegans.

Authors:  Aja McDonagh; Jeannette Crew; Alexander M van der Linden
Journal:  G3 (Bethesda)       Date:  2022-05-30       Impact factor: 3.542

9.  The invertebrate Caenorhabditis elegans biosynthesizes ascorbate.

Authors:  Alexander N Patananan; Lauren M Budenholzer; Maria E Pedraza; Eric R Torres; Lital N Adler; Steven G Clarke
Journal:  Arch Biochem Biophys       Date:  2015-02-07       Impact factor: 4.013

10.  Construction of Fluorescent Analogs to Follow the Uptake and Distribution of Cobalamin (Vitamin B12) in Bacteria, Worms, and Plants.

Authors:  Andrew D Lawrence; Emi Nemoto-Smith; Evelyne Deery; Joseph A Baker; Susanne Schroeder; David G Brown; Jennifer M A Tullet; Mark J Howard; Ian R Brown; Alison G Smith; Helena I Boshoff; Clifton E Barry; Martin J Warren
Journal:  Cell Chem Biol       Date:  2018-05-17       Impact factor: 8.116

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