Literature DB >> 25171653

Digital data repositories in chemistry and their integration with journals and electronic notebooks.

Matthew J Harvey1, Nicholas J Mason, Henry S Rzepa.   

Abstract

We discuss the concept of recasting the data-rich scientific journal article into two components, a narrative and separate data components, each of which is assigned a persistent digital object identifier. Doing so allows each of these components to exist in an environment optimized for purpose. We make use of a poorly-known feature of the handle system for assigning persistent identifiers that allows an individual data file from a larger file set to be retrieved according to its file name or its MIME type. The data objects allow facile visualization and retrieval for reuse of the data and facilitates other operations such as data mining. Examples from five recently published articles illustrate these concepts.

Mesh:

Year:  2014        PMID: 25171653     DOI: 10.1021/ci500302p

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  4 in total

1.  Standards-based curation of a decade-old digital repository dataset of molecular information.

Authors:  Matthew J Harvey; Nicholas J Mason; Andrew McLean; Peter Murray-Rust; Henry S Rzepa; James J P Stewart
Journal:  J Cheminform       Date:  2015-08-27       Impact factor: 5.514

2.  Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data.

Authors:  Alex M Clark; Antony J Williams; Sean Ekins
Journal:  J Cheminform       Date:  2015-03-22       Impact factor: 5.514

3.  Standards-based metadata procedures for retrieving data for display or mining utilizing persistent (data-DOI) identifiers.

Authors:  Matthew J Harvey; Nicholas J Mason; Andrew McLean; Henry S Rzepa
Journal:  J Cheminform       Date:  2015-08-08       Impact factor: 5.514

4.  A metadata-driven approach to data repository design.

Authors:  Matthew J Harvey; Andrew McLean; Henry S Rzepa
Journal:  J Cheminform       Date:  2017-01-24       Impact factor: 5.514

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.