| Literature DB >> 25161584 |
Lauren A Mitchell1, Bradley J Holliday1.
Abstract
In the title mol-ecule, C12H11NO2S, the dioxane-type ring adopts a half-chair conformation. The thio-phene ring forms a dihedral angle of 12.53 (6)° with the benzene ring. In the crystal, N-H⋯O, hydrogen bonds link mol-ecules, forming chains along the c-axis direction. A weak intra-molecular C-H⋯O hydrogen bond is observed.Entities:
Keywords: crystal structure
Year: 2014 PMID: 25161584 PMCID: PMC4120538 DOI: 10.1107/S1600536814014093
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H11NO2S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2964 reflections |
| θ = 2.9–28.2° | |
| µ = 0.29 mm−1 | |
| Plate, orange | |
| 0.29 × 0.27 × 0.08 mm |
| Rigaku Saturn724+ diffractometer | 1853 independent reflections |
| Radiation source: fine-focus sealed tube | 1812 reflections with |
| Graphite monochromator | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
| profile data from ω scans | |
| Absorption correction: multi-scan ( | |
| 11854 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1853 reflections | Δρmax = 0.43 e Å−3 |
| 153 parameters | Δρmin = −0.21 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 743 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.53914 (6) | 0.63412 (6) | 0.83637 (2) | 0.02511 (15) | |
| O1 | 0.73741 (18) | 0.56761 (18) | 0.66914 (6) | 0.0229 (3) | |
| O2 | 1.02695 (18) | 0.47874 (17) | 0.76297 (6) | 0.0203 (3) | |
| N1 | 1.1401 (3) | 0.4133 (3) | 1.07137 (9) | 0.0332 (4) | |
| C1 | 0.5329 (3) | 0.6408 (3) | 0.75642 (9) | 0.0257 (4) | |
| H1 | 0.4267 | 0.6801 | 0.7332 | 0.031* | |
| C2 | 0.7019 (3) | 0.5818 (2) | 0.73164 (9) | 0.0199 (4) | |
| C3 | 0.9069 (3) | 0.4540 (3) | 0.65674 (9) | 0.0238 (4) | |
| H3A | 0.9447 | 0.4687 | 0.6135 | 0.029* | |
| H3B | 0.8767 | 0.3220 | 0.6638 | 0.029* | |
| C4 | 1.0715 (3) | 0.5118 (3) | 0.69824 (8) | 0.0207 (4) | |
| H4A | 1.1865 | 0.4411 | 0.6870 | 0.025* | |
| H4B | 1.0988 | 0.6447 | 0.6921 | 0.025* | |
| C5 | 0.8432 (2) | 0.5355 (2) | 0.77795 (8) | 0.0182 (4) | |
| C6 | 0.7780 (2) | 0.5557 (2) | 0.83812 (9) | 0.0196 (4) | |
| C7 | 0.8775 (3) | 0.5263 (2) | 0.89751 (9) | 0.0199 (4) | |
| C8 | 1.0548 (3) | 0.4311 (2) | 0.90137 (9) | 0.0225 (4) | |
| H8 | 1.1154 | 0.3915 | 0.8650 | 0.027* | |
| C9 | 1.1417 (3) | 0.3948 (3) | 0.95825 (9) | 0.0262 (4) | |
| H9 | 1.2593 | 0.3312 | 0.9595 | 0.031* | |
| C10 | 1.0543 (3) | 0.4530 (3) | 1.01393 (9) | 0.0250 (4) | |
| C11 | 0.8850 (3) | 0.5570 (3) | 1.01015 (9) | 0.0266 (4) | |
| H11 | 0.8296 | 0.6041 | 1.0464 | 0.032* | |
| C12 | 0.7970 (3) | 0.5920 (3) | 0.95357 (9) | 0.0257 (4) | |
| H12 | 0.6823 | 0.6605 | 0.9526 | 0.031* | |
| H10A | 1.065 (4) | 0.415 (3) | 1.1041 (11) | 0.035 (6)* | |
| H10B | 1.215 (4) | 0.315 (4) | 1.0685 (12) | 0.042 (7)* |
| S1 | 0.0134 (2) | 0.0283 (3) | 0.0336 (3) | 0.0022 (2) | 0.0016 (2) | −0.0034 (2) |
| O1 | 0.0188 (6) | 0.0237 (6) | 0.0262 (7) | 0.0012 (5) | −0.0045 (6) | −0.0017 (5) |
| O2 | 0.0152 (6) | 0.0226 (6) | 0.0230 (6) | 0.0032 (6) | 0.0014 (5) | 0.0021 (5) |
| N1 | 0.0385 (11) | 0.0316 (10) | 0.0295 (11) | 0.0059 (9) | −0.0036 (9) | 0.0010 (8) |
| C1 | 0.0154 (8) | 0.0235 (8) | 0.0382 (11) | 0.0007 (9) | −0.0046 (8) | −0.0025 (8) |
| C2 | 0.0185 (9) | 0.0146 (8) | 0.0264 (10) | −0.0029 (7) | −0.0037 (7) | 0.0002 (7) |
| C3 | 0.0210 (9) | 0.0215 (9) | 0.0289 (10) | 0.0005 (8) | 0.0002 (7) | −0.0030 (8) |
| C4 | 0.0191 (9) | 0.0185 (8) | 0.0245 (10) | 0.0006 (7) | 0.0026 (8) | 0.0001 (7) |
| C5 | 0.0123 (8) | 0.0121 (8) | 0.0302 (10) | −0.0009 (7) | −0.0002 (7) | −0.0007 (7) |
| C6 | 0.0121 (8) | 0.0146 (8) | 0.0322 (10) | −0.0004 (7) | 0.0012 (8) | 0.0009 (8) |
| C7 | 0.0181 (9) | 0.0144 (8) | 0.0271 (10) | −0.0032 (7) | 0.0029 (7) | 0.0014 (7) |
| C8 | 0.0225 (9) | 0.0204 (8) | 0.0244 (9) | 0.0030 (8) | 0.0000 (8) | −0.0019 (7) |
| C9 | 0.0233 (9) | 0.0226 (9) | 0.0327 (11) | 0.0053 (8) | −0.0040 (8) | −0.0028 (8) |
| C10 | 0.0284 (10) | 0.0202 (8) | 0.0264 (10) | −0.0053 (9) | −0.0015 (8) | 0.0030 (8) |
| C11 | 0.0263 (10) | 0.0288 (10) | 0.0247 (10) | −0.0014 (9) | 0.0074 (8) | −0.0011 (8) |
| C12 | 0.0202 (9) | 0.0243 (9) | 0.0327 (11) | 0.0022 (8) | 0.0048 (8) | 0.0027 (8) |
| S1—C1 | 1.718 (2) | C4—H4A | 0.9700 |
| S1—C6 | 1.7424 (18) | C4—H4B | 0.9700 |
| O1—C2 | 1.368 (2) | C5—C6 | 1.376 (3) |
| O1—C3 | 1.446 (2) | C6—C7 | 1.464 (3) |
| O2—C5 | 1.370 (2) | C7—C8 | 1.402 (3) |
| O2—C4 | 1.443 (2) | C7—C12 | 1.406 (3) |
| N1—C10 | 1.397 (3) | C8—C9 | 1.385 (3) |
| N1—H10A | 0.87 (3) | C8—H8 | 0.9300 |
| N1—H10B | 0.87 (3) | C9—C10 | 1.402 (3) |
| C1—C2 | 1.350 (3) | C9—H9 | 0.9300 |
| C1—H1 | 0.9300 | C10—C11 | 1.385 (3) |
| C2—C5 | 1.432 (3) | C11—C12 | 1.382 (3) |
| C3—C4 | 1.503 (3) | C11—H11 | 0.9300 |
| C3—H3A | 0.9700 | C12—H12 | 0.9300 |
| C3—H3B | 0.9700 | ||
| C1—S1—C6 | 93.10 (9) | O2—C5—C6 | 123.69 (16) |
| C2—O1—C3 | 111.52 (14) | O2—C5—C2 | 122.42 (16) |
| C5—O2—C4 | 112.11 (13) | C6—C5—C2 | 113.89 (16) |
| C10—N1—H10A | 117.2 (17) | C5—C6—C7 | 130.51 (16) |
| C10—N1—H10B | 110.5 (17) | C5—C6—S1 | 108.87 (14) |
| H10A—N1—H10B | 115 (2) | C7—C6—S1 | 120.60 (14) |
| C2—C1—S1 | 111.33 (15) | C8—C7—C12 | 117.05 (17) |
| C2—C1—H1 | 124.3 | C8—C7—C6 | 122.06 (16) |
| S1—C1—H1 | 124.3 | C12—C7—C6 | 120.89 (17) |
| C1—C2—O1 | 124.39 (17) | C9—C8—C7 | 121.37 (18) |
| C1—C2—C5 | 112.78 (17) | C9—C8—H8 | 119.3 |
| O1—C2—C5 | 122.83 (16) | C7—C8—H8 | 119.3 |
| O1—C3—C4 | 110.61 (14) | C8—C9—C10 | 120.74 (18) |
| O1—C3—H3A | 109.5 | C8—C9—H9 | 119.6 |
| C4—C3—H3A | 109.5 | C10—C9—H9 | 119.6 |
| O1—C3—H3B | 109.5 | C11—C10—N1 | 121.13 (19) |
| C4—C3—H3B | 109.5 | C11—C10—C9 | 118.06 (18) |
| H3A—C3—H3B | 108.1 | N1—C10—C9 | 120.76 (19) |
| O2—C4—C3 | 111.42 (15) | C12—C11—C10 | 121.27 (18) |
| O2—C4—H4A | 109.3 | C12—C11—H11 | 119.4 |
| C3—C4—H4A | 109.3 | C10—C11—H11 | 119.4 |
| O2—C4—H4B | 109.3 | C11—C12—C7 | 121.31 (18) |
| C3—C4—H4B | 109.3 | C11—C12—H12 | 119.3 |
| H4A—C4—H4B | 108.0 | C7—C12—H12 | 119.3 |
| C6—S1—C1—C2 | 1.54 (14) | C2—C5—C6—S1 | −0.29 (19) |
| S1—C1—C2—O1 | 178.30 (13) | C1—S1—C6—C5 | −0.68 (13) |
| S1—C1—C2—C5 | −2.0 (2) | C1—S1—C6—C7 | 177.95 (14) |
| C3—O1—C2—C1 | −164.18 (17) | C5—C6—C7—C8 | −13.8 (3) |
| C3—O1—C2—C5 | 16.1 (2) | S1—C6—C7—C8 | 167.89 (14) |
| C2—O1—C3—C4 | −46.87 (19) | C5—C6—C7—C12 | 166.69 (19) |
| C5—O2—C4—C3 | −44.06 (19) | S1—C6—C7—C12 | −11.6 (2) |
| O1—C3—C4—O2 | 63.54 (19) | C12—C7—C8—C9 | 3.3 (3) |
| C4—O2—C5—C6 | −166.28 (16) | C6—C7—C8—C9 | −176.21 (18) |
| C4—O2—C5—C2 | 12.9 (2) | C7—C8—C9—C10 | −0.1 (3) |
| C1—C2—C5—O2 | −177.73 (15) | C8—C9—C10—C11 | −3.7 (3) |
| O1—C2—C5—O2 | 2.0 (3) | C8—C9—C10—N1 | 178.79 (19) |
| C1—C2—C5—C6 | 1.5 (2) | N1—C10—C11—C12 | −178.21 (19) |
| O1—C2—C5—C6 | −178.78 (15) | C9—C10—C11—C12 | 4.3 (3) |
| O2—C5—C6—C7 | 0.5 (3) | C10—C11—C12—C7 | −1.1 (3) |
| C2—C5—C6—C7 | −178.74 (17) | C8—C7—C12—C11 | −2.7 (3) |
| O2—C5—C6—S1 | 178.91 (13) | C6—C7—C12—C11 | 176.79 (17) |
| H··· | ||||
| N1—H10 | 0.88 (3) | 2.52 (3) | 3.352 (2) | 160 (2) |
| C8—H8···O2 | 0.93 | 2.36 | 2.998 (2) | 126 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H10 | 0.88 (3) | 2.52 (3) | 3.352 (2) | 160 (2) |
| C8—H8⋯O2 | 0.93 | 2.36 | 2.998 (2) | 126 |
Symmetry code: (i) .