Literature DB >> 25161584

4-(2,3-Di-hydro-thieno[3,4-b][1,4]dioxin-5-yl)aniline.

Lauren A Mitchell1, Bradley J Holliday1.   

Abstract

In the title mol-ecule, C12H11NO2S, the dioxane-type ring adopts a half-chair conformation. The thio-phene ring forms a dihedral angle of 12.53 (6)° with the benzene ring. In the crystal, N-H⋯O, hydrogen bonds link mol-ecules, forming chains along the c-axis direction. A weak intra-molecular C-H⋯O hydrogen bond is observed.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25161584      PMCID: PMC4120538          DOI: 10.1107/S1600536814014093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chen et al. (2011 ▶); Riehn et al. (2000 ▶); Sotzing & Reynolds (1996 ▶). For the properties of 4-(2,3-di­hydro­thieno[3,4-b][1,4]dioxin-5-yl)aniline see: Trippé-Allard & Lacroix (2013 ▶).

Experimental

Crystal data

C12H11NO2S M = 233.28 Orthorhombic, a = 6.9117 (6) Å b = 7.0898 (6) Å c = 21.4784 (16) Å V = 1052.50 (15) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.29 × 0.27 × 0.08 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 2001 ▶) T min = 0.858, T max = 1.000 11854 measured reflections 1853 independent reflections 1812 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 0.86 1853 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 743 Friedel pairs Absolute structure parameter: 0.03 (8) Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶), POV-RAY (Cason, 2004 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814014093/lh5708Isup3.cml CCDC reference: 1008614 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H11NO2SF(000) = 488
Mr = 233.28Dx = 1.472 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2abCell parameters from 2964 reflections
a = 6.9117 (6) Åθ = 2.9–28.2°
b = 7.0898 (6) ŵ = 0.29 mm1
c = 21.4784 (16) ÅT = 100 K
V = 1052.50 (15) Å3Plate, orange
Z = 40.29 × 0.27 × 0.08 mm
Rigaku Saturn724+ diffractometer1853 independent reflections
Radiation source: fine-focus sealed tube1812 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 3.0°
profile data from ω scansh = −8→8
Absorption correction: multi-scan (ABSCOR; Higashi, 2001)k = −8→8
Tmin = 0.858, Tmax = 1.000l = −22→25
11854 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0543P)2 + 0.6318P] where P = (Fo2 + 2Fc2)/3
S = 0.86(Δ/σ)max = 0.001
1853 reflectionsΔρmax = 0.43 e Å3
153 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 743 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.03 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.53914 (6)0.63412 (6)0.83637 (2)0.02511 (15)
O10.73741 (18)0.56761 (18)0.66914 (6)0.0229 (3)
O21.02695 (18)0.47874 (17)0.76297 (6)0.0203 (3)
N11.1401 (3)0.4133 (3)1.07137 (9)0.0332 (4)
C10.5329 (3)0.6408 (3)0.75642 (9)0.0257 (4)
H10.42670.68010.73320.031*
C20.7019 (3)0.5818 (2)0.73164 (9)0.0199 (4)
C30.9069 (3)0.4540 (3)0.65674 (9)0.0238 (4)
H3A0.94470.46870.61350.029*
H3B0.87670.32200.66380.029*
C41.0715 (3)0.5118 (3)0.69824 (8)0.0207 (4)
H4A1.18650.44110.68700.025*
H4B1.09880.64470.69210.025*
C50.8432 (2)0.5355 (2)0.77795 (8)0.0182 (4)
C60.7780 (2)0.5557 (2)0.83812 (9)0.0196 (4)
C70.8775 (3)0.5263 (2)0.89751 (9)0.0199 (4)
C81.0548 (3)0.4311 (2)0.90137 (9)0.0225 (4)
H81.11540.39150.86500.027*
C91.1417 (3)0.3948 (3)0.95825 (9)0.0262 (4)
H91.25930.33120.95950.031*
C101.0543 (3)0.4530 (3)1.01393 (9)0.0250 (4)
C110.8850 (3)0.5570 (3)1.01015 (9)0.0266 (4)
H110.82960.60411.04640.032*
C120.7970 (3)0.5920 (3)0.95357 (9)0.0257 (4)
H120.68230.66050.95260.031*
H10A1.065 (4)0.415 (3)1.1041 (11)0.035 (6)*
H10B1.215 (4)0.315 (4)1.0685 (12)0.042 (7)*
U11U22U33U12U13U23
S10.0134 (2)0.0283 (3)0.0336 (3)0.0022 (2)0.0016 (2)−0.0034 (2)
O10.0188 (6)0.0237 (6)0.0262 (7)0.0012 (5)−0.0045 (6)−0.0017 (5)
O20.0152 (6)0.0226 (6)0.0230 (6)0.0032 (6)0.0014 (5)0.0021 (5)
N10.0385 (11)0.0316 (10)0.0295 (11)0.0059 (9)−0.0036 (9)0.0010 (8)
C10.0154 (8)0.0235 (8)0.0382 (11)0.0007 (9)−0.0046 (8)−0.0025 (8)
C20.0185 (9)0.0146 (8)0.0264 (10)−0.0029 (7)−0.0037 (7)0.0002 (7)
C30.0210 (9)0.0215 (9)0.0289 (10)0.0005 (8)0.0002 (7)−0.0030 (8)
C40.0191 (9)0.0185 (8)0.0245 (10)0.0006 (7)0.0026 (8)0.0001 (7)
C50.0123 (8)0.0121 (8)0.0302 (10)−0.0009 (7)−0.0002 (7)−0.0007 (7)
C60.0121 (8)0.0146 (8)0.0322 (10)−0.0004 (7)0.0012 (8)0.0009 (8)
C70.0181 (9)0.0144 (8)0.0271 (10)−0.0032 (7)0.0029 (7)0.0014 (7)
C80.0225 (9)0.0204 (8)0.0244 (9)0.0030 (8)0.0000 (8)−0.0019 (7)
C90.0233 (9)0.0226 (9)0.0327 (11)0.0053 (8)−0.0040 (8)−0.0028 (8)
C100.0284 (10)0.0202 (8)0.0264 (10)−0.0053 (9)−0.0015 (8)0.0030 (8)
C110.0263 (10)0.0288 (10)0.0247 (10)−0.0014 (9)0.0074 (8)−0.0011 (8)
C120.0202 (9)0.0243 (9)0.0327 (11)0.0022 (8)0.0048 (8)0.0027 (8)
S1—C11.718 (2)C4—H4A0.9700
S1—C61.7424 (18)C4—H4B0.9700
O1—C21.368 (2)C5—C61.376 (3)
O1—C31.446 (2)C6—C71.464 (3)
O2—C51.370 (2)C7—C81.402 (3)
O2—C41.443 (2)C7—C121.406 (3)
N1—C101.397 (3)C8—C91.385 (3)
N1—H10A0.87 (3)C8—H80.9300
N1—H10B0.87 (3)C9—C101.402 (3)
C1—C21.350 (3)C9—H90.9300
C1—H10.9300C10—C111.385 (3)
C2—C51.432 (3)C11—C121.382 (3)
C3—C41.503 (3)C11—H110.9300
C3—H3A0.9700C12—H120.9300
C3—H3B0.9700
C1—S1—C693.10 (9)O2—C5—C6123.69 (16)
C2—O1—C3111.52 (14)O2—C5—C2122.42 (16)
C5—O2—C4112.11 (13)C6—C5—C2113.89 (16)
C10—N1—H10A117.2 (17)C5—C6—C7130.51 (16)
C10—N1—H10B110.5 (17)C5—C6—S1108.87 (14)
H10A—N1—H10B115 (2)C7—C6—S1120.60 (14)
C2—C1—S1111.33 (15)C8—C7—C12117.05 (17)
C2—C1—H1124.3C8—C7—C6122.06 (16)
S1—C1—H1124.3C12—C7—C6120.89 (17)
C1—C2—O1124.39 (17)C9—C8—C7121.37 (18)
C1—C2—C5112.78 (17)C9—C8—H8119.3
O1—C2—C5122.83 (16)C7—C8—H8119.3
O1—C3—C4110.61 (14)C8—C9—C10120.74 (18)
O1—C3—H3A109.5C8—C9—H9119.6
C4—C3—H3A109.5C10—C9—H9119.6
O1—C3—H3B109.5C11—C10—N1121.13 (19)
C4—C3—H3B109.5C11—C10—C9118.06 (18)
H3A—C3—H3B108.1N1—C10—C9120.76 (19)
O2—C4—C3111.42 (15)C12—C11—C10121.27 (18)
O2—C4—H4A109.3C12—C11—H11119.4
C3—C4—H4A109.3C10—C11—H11119.4
O2—C4—H4B109.3C11—C12—C7121.31 (18)
C3—C4—H4B109.3C11—C12—H12119.3
H4A—C4—H4B108.0C7—C12—H12119.3
C6—S1—C1—C21.54 (14)C2—C5—C6—S1−0.29 (19)
S1—C1—C2—O1178.30 (13)C1—S1—C6—C5−0.68 (13)
S1—C1—C2—C5−2.0 (2)C1—S1—C6—C7177.95 (14)
C3—O1—C2—C1−164.18 (17)C5—C6—C7—C8−13.8 (3)
C3—O1—C2—C516.1 (2)S1—C6—C7—C8167.89 (14)
C2—O1—C3—C4−46.87 (19)C5—C6—C7—C12166.69 (19)
C5—O2—C4—C3−44.06 (19)S1—C6—C7—C12−11.6 (2)
O1—C3—C4—O263.54 (19)C12—C7—C8—C93.3 (3)
C4—O2—C5—C6−166.28 (16)C6—C7—C8—C9−176.21 (18)
C4—O2—C5—C212.9 (2)C7—C8—C9—C10−0.1 (3)
C1—C2—C5—O2−177.73 (15)C8—C9—C10—C11−3.7 (3)
O1—C2—C5—O22.0 (3)C8—C9—C10—N1178.79 (19)
C1—C2—C5—C61.5 (2)N1—C10—C11—C12−178.21 (19)
O1—C2—C5—C6−178.78 (15)C9—C10—C11—C124.3 (3)
O2—C5—C6—C70.5 (3)C10—C11—C12—C7−1.1 (3)
C2—C5—C6—C7−178.74 (17)C8—C7—C12—C11−2.7 (3)
O2—C5—C6—S1178.91 (13)C6—C7—C12—C11176.79 (17)
D—H···AD—HH···AD···AD—H···A
N1—H10A···O1i0.88 (3)2.52 (3)3.352 (2)160 (2)
C8—H8···O20.932.362.998 (2)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H10A⋯O1i 0.88 (3)2.52 (3)3.352 (2)160 (2)
C8—H8⋯O20.932.362.998 (2)126

Symmetry code: (i) .

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