Literature DB >> 25161578

6-Bromo-N-(6-bromo-pyridin-2-yl)-N-[4-(2,3-di-hydro-thieno[3,4-b][1,4]dioxin-5-yl)phen-yl]pyridin-2-amine.

Lauren A Mitchell1, Bradley J Holliday1.   

Abstract

In the title mol-ecule, <span class="Chemical">C22H15Br2N3O2Sn>, the central <span class="Chemical">benzene ring forms dihedral angles of 12.39 (17), 56.66 (17) and 74.71 (19)°, respectively, with the mean planes of the <span class="Chemical">thio-phene and two pyridine rings. The dioxane ring is in a half-chair conformation. An intra-molecular C-H⋯O hydrogen forms an S(6) ring. The amine N atom is sp (2)-hybridized.

Entities:  

Year:  2014        PMID: 25161578      PMCID: PMC4120601          DOI: 10.1107/S1600536814013191

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chen et al. (2011 ▶); Sotzing & Reynolds (1996 ▶); de Betterncourt-Dias et al. (2011 ▶). For applications of simliar compounds, see: Chahma et al. (2007 ▶); Roncali et al. (2005 ▶). For the synthesis of the starting material 4-(2,3-di­hydro­thieno[3,4-b][1,4]dioxin-5-yl)aniline, see: Trippé-Allard & Lacroix (2013 ▶). For the calculation of the functionality of the <span class="Chemical">aminen> group in terms of hybridization, see: Allen et al. (1995 ▶). For <span class="Chemical">hydrogen-bond graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

<span class="Chemical">C22H15Br2N3O2Sn> M = 545.25 Triclinic, a = 4.483 (4) Å b = 12.151 (9) Å c = 18.958 (13) Å α = 75.807 (18)° β = 87.67 (3)° γ = 89.62 (2)° V = 1000.3 (13) Å3 Z = 2 Mo Kα radiation μ = 4.18 mm−1 T = 100 K 0.22 × 0.03 × 0.03 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 2001 ▶) T min = 0.563, T max = 1.000 13439 measured reflections 3521 independent reflections 2732 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.128 S = 1.00 3521 reflections 271 parameters H-atom parameters constrained Δρmax = 1.06 e Å−3 Δρmin = −0.83 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and POV-RAY (Cason, 2004 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814013191/lh5709sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013191/lh5709Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013191/lh5709Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H15Br2N3O2SZ = 2
Mr = 545.25F(000) = 540
Triclinic, P1Dx = 1.810 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 4.483 (4) ÅCell parameters from 3281 reflections
b = 12.151 (9) Åθ = 1.7–27.7°
c = 18.958 (13) ŵ = 4.18 mm1
α = 75.807 (18)°T = 100 K
β = 87.67 (3)°Prism, colorless
γ = 89.62 (2)°0.22 × 0.03 × 0.03 mm
V = 1000.3 (13) Å3
Rigaku Saturn724+ diffractometer3521 independent reflections
Radiation source: fine-focus sealed tube2732 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.079
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 1.7°
dtprofit.ref scansh = −5→5
Absorption correction: multi-scan (ABSCOR; Higashi, 2001)k = −14→14
Tmin = 0.563, Tmax = 1.000l = −22→22
13439 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0638P)2] where P = (Fo2 + 2Fc2)/3
3521 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 1.06 e Å3
0 restraintsΔρmin = −0.83 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4149 (12)0.8677 (5)0.3436 (3)0.0254 (13)
H10.40190.91000.29580.030*
C20.5672 (11)0.7710 (5)0.3635 (3)0.0223 (12)
C30.7454 (12)0.6007 (5)0.3458 (3)0.0244 (13)
H3A0.87360.56750.31410.029*
H3B0.54910.56630.34890.029*
C40.8723 (12)0.5774 (5)0.4210 (3)0.0238 (12)
H4A0.89820.49620.43950.029*
H4B1.06660.61330.41770.029*
C50.5503 (10)0.7210 (5)0.4403 (3)0.0188 (11)
C60.3812 (11)0.7836 (5)0.4784 (3)0.0214 (12)
C70.3032 (11)0.7649 (4)0.5558 (3)0.0181 (11)
C80.0814 (12)0.8290 (5)0.5805 (3)0.0238 (12)
H8−0.01790.88410.54670.029*
C90.0052 (12)0.8131 (5)0.6533 (3)0.0235 (12)
H9−0.14700.85600.66800.028*
C100.1546 (11)0.7335 (5)0.7049 (3)0.0216 (12)
C110.3738 (11)0.6680 (5)0.6820 (3)0.0215 (12)
H110.47330.61380.71630.026*
C120.4468 (11)0.6822 (5)0.6089 (3)0.0208 (12)
H120.59270.63660.59450.025*
C130.0144 (11)0.8117 (5)0.8102 (3)0.0201 (12)
C140.1319 (11)0.9198 (5)0.7798 (3)0.0248 (13)
H140.26320.93250.73930.030*
C150.0499 (12)1.0077 (5)0.8109 (3)0.0264 (13)
H150.12161.08090.79100.032*
C16−0.1433 (12)0.9848 (5)0.8729 (3)0.0257 (13)
H16−0.20451.04160.89540.031*
C17−0.2361 (11)0.8761 (5)0.8984 (3)0.0235 (12)
C180.0708 (11)0.6057 (5)0.8273 (3)0.0204 (12)
C190.2220 (12)0.5796 (5)0.8916 (3)0.0230 (12)
H190.33440.63410.90570.028*
C200.2000 (11)0.4706 (5)0.9338 (3)0.0239 (12)
H200.29520.45080.97780.029*
C210.0373 (11)0.3899 (5)0.9114 (3)0.0221 (12)
H210.01750.31570.93940.027*
C22−0.0947 (11)0.4255 (5)0.8448 (3)0.0214 (12)
N1−0.1728 (9)0.7893 (4)0.8702 (2)0.0208 (10)
N20.0834 (10)0.7185 (4)0.7811 (2)0.0223 (10)
N3−0.0829 (9)0.5300 (4)0.8032 (2)0.0208 (10)
O10.7239 (8)0.7215 (3)0.31571 (18)0.0250 (9)
O20.6761 (8)0.6202 (3)0.47078 (18)0.0228 (9)
S10.2461 (3)0.90420 (13)0.41770 (7)0.0266 (3)
Br1−0.49638 (12)0.83856 (5)0.98380 (3)0.02763 (19)
Br2−0.31232 (12)0.31910 (5)0.80909 (3)0.02536 (18)
U11U22U33U12U13U23
C10.042 (3)0.024 (3)0.009 (3)0.000 (3)0.005 (2)−0.002 (2)
C20.028 (3)0.026 (3)0.017 (3)−0.004 (2)0.004 (2)−0.014 (2)
C30.033 (3)0.025 (3)0.019 (3)0.002 (2)0.001 (2)−0.014 (3)
C40.028 (3)0.025 (3)0.022 (3)0.002 (2)0.001 (2)−0.012 (2)
C50.018 (3)0.026 (3)0.015 (3)0.000 (2)0.0007 (19)−0.009 (2)
C60.026 (3)0.023 (3)0.018 (3)0.002 (2)−0.002 (2)−0.010 (2)
C70.025 (3)0.019 (3)0.011 (2)0.001 (2)0.001 (2)−0.006 (2)
C80.029 (3)0.024 (3)0.019 (3)0.007 (2)−0.003 (2)−0.006 (2)
C90.032 (3)0.021 (3)0.018 (3)0.004 (2)0.009 (2)−0.009 (2)
C100.026 (3)0.024 (3)0.018 (3)−0.003 (2)0.001 (2)−0.011 (2)
C110.029 (3)0.022 (3)0.015 (3)0.000 (2)−0.001 (2)−0.006 (2)
C120.025 (3)0.020 (3)0.018 (3)0.004 (2)0.003 (2)−0.007 (2)
C130.028 (3)0.019 (3)0.014 (3)0.001 (2)0.001 (2)−0.008 (2)
C140.029 (3)0.027 (3)0.020 (3)−0.001 (2)0.005 (2)−0.010 (3)
C150.033 (3)0.024 (3)0.022 (3)−0.005 (2)0.002 (2)−0.006 (2)
C160.038 (3)0.023 (3)0.021 (3)0.001 (3)0.004 (2)−0.015 (3)
C170.025 (3)0.033 (4)0.017 (3)0.006 (2)−0.003 (2)−0.016 (3)
C180.022 (3)0.025 (3)0.018 (3)0.005 (2)0.001 (2)−0.013 (2)
C190.024 (3)0.033 (3)0.016 (3)0.003 (2)−0.001 (2)−0.014 (3)
C200.028 (3)0.027 (3)0.018 (3)0.003 (2)−0.001 (2)−0.008 (3)
C210.025 (3)0.022 (3)0.018 (3)0.002 (2)0.001 (2)−0.003 (2)
C220.029 (3)0.023 (3)0.015 (3)−0.001 (2)0.008 (2)−0.011 (2)
N10.027 (2)0.021 (3)0.016 (2)0.0047 (19)−0.0002 (18)−0.009 (2)
N20.032 (2)0.021 (3)0.017 (2)−0.001 (2)0.0055 (18)−0.011 (2)
N30.029 (2)0.022 (3)0.013 (2)0.000 (2)0.0068 (18)−0.009 (2)
O10.035 (2)0.030 (2)0.0138 (18)−0.0010 (17)0.0057 (15)−0.0128 (17)
O20.031 (2)0.027 (2)0.0130 (18)0.0098 (17)0.0015 (15)−0.0090 (17)
S10.0396 (8)0.0243 (8)0.0158 (7)0.0065 (6)0.0026 (6)−0.0057 (6)
Br10.0357 (3)0.0294 (4)0.0196 (3)0.0038 (3)0.0076 (2)−0.0111 (3)
Br20.0329 (3)0.0260 (4)0.0200 (3)−0.0033 (2)0.0029 (2)−0.0115 (2)
C1—C21.335 (7)C11—H110.9300
C1—S11.719 (5)C12—H120.9300
C1—H10.9300C13—N11.360 (6)
C2—O11.374 (6)C13—C141.396 (8)
C2—C51.433 (7)C13—N21.403 (7)
C3—O11.442 (6)C14—C151.382 (8)
C3—C41.517 (7)C14—H140.9300
C3—H3A0.9700C15—C161.403 (7)
C3—H3B0.9700C15—H150.9300
C4—O21.450 (6)C16—C171.353 (8)
C4—H4A0.9700C16—H160.9300
C4—H4B0.9700C17—N11.318 (7)
C5—O21.351 (6)C17—Br11.919 (5)
C5—C61.376 (7)C18—N31.330 (7)
C6—C71.457 (7)C18—C191.386 (7)
C6—S11.748 (5)C18—N21.435 (7)
C7—C81.394 (7)C19—C201.371 (8)
C7—C121.409 (7)C19—H190.9300
C8—C91.375 (7)C20—C211.384 (8)
C8—H80.9300C20—H200.9300
C9—C101.386 (7)C21—C221.386 (7)
C9—H90.9300C21—H210.9300
C10—C111.382 (7)C22—N31.319 (7)
C10—N21.433 (6)C22—Br21.893 (6)
C11—C121.380 (7)
C2—C1—S1111.4 (4)C11—C12—H12119.6
C2—C1—H1124.3C7—C12—H12119.6
S1—C1—H1124.3N1—C13—C14122.3 (5)
C1—C2—O1124.1 (5)N1—C13—N2115.4 (5)
C1—C2—C5113.8 (5)C14—C13—N2122.3 (5)
O1—C2—C5122.1 (5)C15—C14—C13118.9 (5)
O1—C3—C4109.9 (4)C15—C14—H14120.6
O1—C3—H3A109.7C13—C14—H14120.6
C4—C3—H3A109.7C14—C15—C16118.9 (6)
O1—C3—H3B109.7C14—C15—H15120.5
C4—C3—H3B109.7C16—C15—H15120.5
H3A—C3—H3B108.2C17—C16—C15116.7 (5)
O2—C4—C3111.0 (4)C17—C16—H16121.6
O2—C4—H4A109.4C15—C16—H16121.6
C3—C4—H4A109.4N1—C17—C16127.3 (5)
O2—C4—H4B109.4N1—C17—Br1113.8 (4)
C3—C4—H4B109.4C16—C17—Br1118.9 (4)
H4A—C4—H4B108.0N3—C18—C19123.6 (5)
O2—C5—C6124.2 (5)N3—C18—N2116.0 (4)
O2—C5—C2122.8 (4)C19—C18—N2120.3 (5)
C6—C5—C2112.9 (5)C20—C19—C18117.6 (5)
C5—C6—C7131.5 (5)C20—C19—H19121.2
C5—C6—S1109.3 (4)C18—C19—H19121.2
C7—C6—S1119.2 (4)C19—C20—C21120.5 (5)
C8—C7—C12117.1 (5)C19—C20—H20119.8
C8—C7—C6120.9 (4)C21—C20—H20119.8
C12—C7—C6122.0 (4)C20—C21—C22116.3 (5)
C9—C8—C7121.9 (5)C20—C21—H21121.8
C9—C8—H8119.0C22—C21—H21121.8
C7—C8—H8119.0N3—C22—C21125.0 (5)
C8—C9—C10120.2 (5)N3—C22—Br2116.1 (4)
C8—C9—H9119.9C21—C22—Br2118.9 (4)
C10—C9—H9119.9C17—N1—C13115.8 (5)
C11—C10—C9119.1 (5)C13—N2—C10121.0 (4)
C11—C10—N2120.1 (5)C13—N2—C18119.9 (4)
C9—C10—N2120.8 (5)C10—N2—C18119.0 (4)
C12—C11—C10120.8 (5)C22—N3—C18116.9 (4)
C12—C11—H11119.6C2—O1—C3110.1 (4)
C10—C11—H11119.6C5—O2—C4113.7 (4)
C11—C12—C7120.9 (5)C1—S1—C692.6 (3)
S1—C1—C2—O1179.9 (4)C18—C19—C20—C211.4 (8)
S1—C1—C2—C50.8 (6)C19—C20—C21—C220.8 (7)
O1—C3—C4—O262.8 (6)C20—C21—C22—N3−2.0 (8)
C1—C2—C5—O2176.4 (5)C20—C21—C22—Br2178.4 (4)
O1—C2—C5—O2−2.7 (8)C16—C17—N1—C132.2 (8)
C1—C2—C5—C6−0.5 (7)Br1—C17—N1—C13−179.1 (3)
O1—C2—C5—C6−179.6 (5)C14—C13—N1—C17−0.3 (7)
O2—C5—C6—C72.6 (9)N2—C13—N1—C17179.3 (4)
C2—C5—C6—C7179.5 (5)N1—C13—N2—C10151.1 (5)
O2—C5—C6—S1−176.9 (4)C14—C13—N2—C10−29.4 (7)
C2—C5—C6—S1−0.1 (6)N1—C13—N2—C18−26.2 (7)
C5—C6—C7—C8−167.6 (6)C14—C13—N2—C18153.3 (5)
S1—C6—C7—C811.9 (7)C11—C10—N2—C13142.0 (5)
C5—C6—C7—C1212.5 (9)C9—C10—N2—C13−38.1 (7)
S1—C6—C7—C12−168.0 (4)C11—C10—N2—C18−40.6 (7)
C12—C7—C8—C90.2 (8)C9—C10—N2—C18139.2 (5)
C6—C7—C8—C9−179.7 (5)N3—C18—N2—C13130.1 (5)
C7—C8—C9—C101.5 (9)C19—C18—N2—C13−52.2 (7)
C8—C9—C10—C11−2.0 (9)N3—C18—N2—C10−47.3 (6)
C8—C9—C10—N2178.1 (5)C19—C18—N2—C10130.4 (5)
C9—C10—C11—C120.8 (9)C21—C22—N3—C180.8 (7)
N2—C10—C11—C12−179.4 (5)Br2—C22—N3—C18−179.6 (3)
C10—C11—C12—C71.0 (9)C19—C18—N3—C221.7 (7)
C8—C7—C12—C11−1.5 (8)N2—C18—N3—C22179.4 (4)
C6—C7—C12—C11178.4 (5)C1—C2—O1—C3−153.8 (5)
N1—C13—C14—C15−1.5 (8)C5—C2—O1—C325.2 (7)
N2—C13—C14—C15179.0 (5)C4—C3—O1—C2−53.4 (5)
C13—C14—C15—C161.4 (8)C6—C5—O2—C4−173.1 (5)
C14—C15—C16—C170.2 (8)C2—C5—O2—C410.3 (7)
C15—C16—C17—N1−2.3 (9)C3—C4—O2—C5−39.1 (6)
C15—C16—C17—Br1179.2 (4)C2—C1—S1—C6−0.7 (5)
N3—C18—C19—C20−2.8 (8)C5—C6—S1—C10.4 (4)
N2—C18—C19—C20179.6 (4)C7—C6—S1—C1−179.2 (5)
D—H···AD—HH···AD···AD—H···A
C12—H12···O20.932.423.036 (7)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯O20.932.423.036 (7)124
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,1',1''-{[4-(3,4-Ethyl-ene-dioxy-thio-phen-2-yl)phen-yl]methane-tri-yl}tris-(1H-pyra-zole).

Authors:  Xiao-Yan Chen; Xiaoping Yang; Bradley J Holliday
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  2 in total

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