| Literature DB >> 25161565 |
Kateryna A Ohui1, Irina A Golenya1, Nadezhda A Bokach2.
Abstract
In the cation of the title salt, C10H10N3 (+)·C6H2N3O7 (-), the pyridine and pyridinium rings are linked by an intra-molecular N-H⋯N hydrogen bond and are approximately coplanar, with a dihedral angle between their planes of 4.24 (6)°. In the crystal, the cations and anions are linked through N-H⋯O hydrogen bonds, forming supra-molecular chains propagating along the c-axis direction. π-π stacking is observed between neighbouring chains, the centroid-centroid distances being 3.7638 (11) (between pyridinium rings) and 3.5331 (11) Å (between benzene rings).Entities:
Year: 2014 PMID: 25161565 PMCID: PMC4120562 DOI: 10.1107/S1600536814012835
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H10N3+·C6H2N3O7− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3858 reflections |
| θ = 2.4–29.9° | |
| µ = 0.13 mm−1 | |
| β = 108.925 (2)° | Block, yellow |
| 0.25 × 0.21 × 0.18 mm | |
| Bruker Kappa APEXII CCD diffractometer | 3253 independent reflections |
| Radiation source: fine-focus sealed tube | 2674 reflections with |
| Horizontally mounted graphite crystal monochromator | |
| Detector resolution: 16 pixels mm-1 | θmax = 26.0°, θmin = 2.2° |
| φ scans and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 10460 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3253 reflections | (Δ/σ)max < 0.001 |
| 270 parameters | Δρmax = 0.59 e Å−3 |
| 0 restraints | Δρmin = −0.55 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.10222 (15) | 0.54091 (9) | −0.17771 (10) | 0.0236 (3) | |
| O2 | −0.06688 (18) | 0.69273 (10) | −0.18938 (11) | 0.0323 (4) | |
| O3 | −0.16715 (15) | 0.69936 (9) | −0.06137 (11) | 0.0259 (3) | |
| O4 | 0.15975 (16) | 0.63990 (10) | 0.29479 (10) | 0.0279 (3) | |
| O5 | 0.35245 (15) | 0.54601 (10) | 0.32327 (10) | 0.0282 (3) | |
| O6 | 0.46259 (16) | 0.40445 (10) | 0.03187 (11) | 0.0289 (3) | |
| O7 | 0.2807 (2) | 0.39426 (15) | −0.11952 (13) | 0.0702 (7) | |
| N1 | −0.01574 (18) | 0.88497 (10) | −0.04563 (12) | 0.0176 (3) | |
| H1N | 0.079 (3) | 0.8656 (16) | −0.0451 (18) | 0.036 (6)* | |
| N2 | 0.08719 (18) | 0.86091 (11) | 0.14029 (12) | 0.0199 (3) | |
| H2N | 0.075 (2) | 0.8730 (15) | 0.2019 (18) | 0.027 (6)* | |
| N3 | 0.26368 (18) | 0.82539 (11) | 0.05248 (12) | 0.0213 (4) | |
| N4 | −0.06696 (18) | 0.67256 (11) | −0.09846 (12) | 0.0212 (3) | |
| N5 | 0.24186 (18) | 0.58829 (11) | 0.26247 (12) | 0.0210 (4) | |
| N6 | 0.3395 (2) | 0.42975 (12) | −0.03160 (13) | 0.0288 (4) | |
| C1 | −0.1325 (2) | 0.90766 (13) | −0.13575 (14) | 0.0206 (4) | |
| H1 | −0.1166 | 0.9064 | −0.2035 | 0.025* | |
| C2 | −0.2720 (2) | 0.93213 (13) | −0.12947 (15) | 0.0232 (4) | |
| H2 | −0.3541 | 0.9481 | −0.1923 | 0.028* | |
| C3 | −0.2925 (2) | 0.93344 (13) | −0.02863 (15) | 0.0238 (4) | |
| H3 | −0.3894 | 0.9507 | −0.0230 | 0.029* | |
| C4 | −0.1746 (2) | 0.91021 (13) | 0.06177 (15) | 0.0216 (4) | |
| H4 | −0.1889 | 0.9113 | 0.1300 | 0.026* | |
| C5 | −0.0325 (2) | 0.88481 (12) | 0.05260 (14) | 0.0173 (4) | |
| C6 | 0.2352 (2) | 0.83475 (12) | 0.14498 (15) | 0.0192 (4) | |
| C7 | 0.3446 (2) | 0.81826 (13) | 0.24528 (15) | 0.0242 (4) | |
| H7 | 0.3202 | 0.8258 | 0.3096 | 0.029* | |
| C8 | 0.4886 (2) | 0.79074 (14) | 0.24768 (17) | 0.0292 (5) | |
| H8 | 0.5662 | 0.7791 | 0.3144 | 0.035* | |
| C9 | 0.5205 (2) | 0.77997 (14) | 0.15200 (18) | 0.0304 (5) | |
| H9 | 0.6193 | 0.7604 | 0.1522 | 0.036* | |
| C10 | 0.4057 (2) | 0.79824 (14) | 0.05736 (17) | 0.0278 (5) | |
| H10 | 0.4277 | 0.7914 | −0.0079 | 0.033* | |
| C11 | 0.1351 (2) | 0.55224 (12) | −0.07926 (14) | 0.0170 (4) | |
| C12 | 0.0569 (2) | 0.61648 (12) | −0.02980 (14) | 0.0171 (4) | |
| C13 | 0.0877 (2) | 0.62673 (12) | 0.07851 (14) | 0.0176 (4) | |
| H13 | 0.0282 | 0.6674 | 0.1055 | 0.021* | |
| C14 | 0.2068 (2) | 0.57704 (12) | 0.14803 (14) | 0.0180 (4) | |
| C15 | 0.2908 (2) | 0.51464 (13) | 0.10980 (14) | 0.0188 (4) | |
| H15 | 0.3731 | 0.4814 | 0.1584 | 0.023* | |
| C16 | 0.2538 (2) | 0.50156 (12) | 0.00165 (14) | 0.0190 (4) |
| O1 | 0.0346 (8) | 0.0227 (7) | 0.0129 (6) | 0.0057 (6) | 0.0068 (6) | 0.0021 (6) |
| O2 | 0.0471 (9) | 0.0303 (8) | 0.0171 (7) | 0.0138 (7) | 0.0070 (6) | 0.0061 (6) |
| O3 | 0.0236 (7) | 0.0218 (7) | 0.0316 (8) | 0.0031 (6) | 0.0082 (6) | −0.0005 (6) |
| O4 | 0.0306 (8) | 0.0354 (8) | 0.0201 (7) | −0.0002 (6) | 0.0116 (6) | −0.0062 (6) |
| O5 | 0.0250 (7) | 0.0407 (9) | 0.0158 (7) | 0.0015 (6) | 0.0021 (6) | 0.0036 (6) |
| O6 | 0.0269 (8) | 0.0336 (8) | 0.0272 (7) | 0.0120 (6) | 0.0102 (6) | 0.0095 (6) |
| O7 | 0.0931 (15) | 0.0786 (14) | 0.0221 (9) | 0.0595 (12) | −0.0045 (9) | −0.0153 (9) |
| N1 | 0.0190 (8) | 0.0170 (8) | 0.0162 (8) | −0.0009 (6) | 0.0052 (6) | −0.0003 (6) |
| N2 | 0.0224 (8) | 0.0240 (8) | 0.0132 (8) | 0.0013 (7) | 0.0056 (6) | −0.0013 (7) |
| N3 | 0.0222 (8) | 0.0207 (8) | 0.0215 (8) | −0.0001 (7) | 0.0076 (7) | −0.0024 (7) |
| N4 | 0.0242 (8) | 0.0166 (8) | 0.0195 (8) | −0.0003 (7) | 0.0026 (7) | −0.0029 (7) |
| N5 | 0.0212 (8) | 0.0256 (8) | 0.0161 (8) | −0.0062 (7) | 0.0060 (7) | −0.0018 (7) |
| N6 | 0.0354 (10) | 0.0328 (10) | 0.0180 (8) | 0.0142 (8) | 0.0084 (7) | 0.0023 (8) |
| C1 | 0.0252 (10) | 0.0201 (9) | 0.0147 (9) | −0.0021 (8) | 0.0041 (7) | 0.0006 (8) |
| C2 | 0.0225 (10) | 0.0226 (10) | 0.0213 (10) | 0.0005 (8) | 0.0025 (8) | 0.0025 (8) |
| C3 | 0.0215 (10) | 0.0228 (10) | 0.0271 (10) | 0.0009 (8) | 0.0079 (8) | −0.0010 (8) |
| C4 | 0.0255 (10) | 0.0215 (10) | 0.0191 (9) | −0.0008 (8) | 0.0092 (8) | −0.0023 (8) |
| C5 | 0.0228 (10) | 0.0128 (8) | 0.0155 (9) | −0.0028 (7) | 0.0051 (7) | −0.0021 (7) |
| C6 | 0.0207 (9) | 0.0141 (9) | 0.0203 (9) | −0.0014 (7) | 0.0034 (7) | −0.0025 (7) |
| C7 | 0.0271 (10) | 0.0220 (10) | 0.0197 (9) | −0.0001 (8) | 0.0023 (8) | −0.0029 (8) |
| C8 | 0.0252 (11) | 0.0229 (10) | 0.0302 (11) | 0.0018 (8) | −0.0036 (8) | −0.0031 (9) |
| C9 | 0.0208 (10) | 0.0276 (11) | 0.0399 (12) | 0.0017 (8) | 0.0059 (9) | −0.0076 (10) |
| C10 | 0.0273 (11) | 0.0266 (11) | 0.0316 (11) | 0.0019 (9) | 0.0124 (9) | −0.0043 (9) |
| C11 | 0.0199 (9) | 0.0150 (9) | 0.0154 (9) | −0.0033 (7) | 0.0049 (7) | 0.0012 (7) |
| C12 | 0.0171 (9) | 0.0147 (9) | 0.0178 (9) | −0.0023 (7) | 0.0032 (7) | 0.0002 (7) |
| C13 | 0.0182 (9) | 0.0160 (9) | 0.0196 (9) | −0.0043 (7) | 0.0074 (7) | −0.0022 (7) |
| C14 | 0.0192 (9) | 0.0209 (9) | 0.0140 (9) | −0.0046 (7) | 0.0057 (7) | −0.0019 (7) |
| C15 | 0.0156 (9) | 0.0222 (9) | 0.0172 (9) | −0.0014 (7) | 0.0034 (7) | 0.0022 (8) |
| C16 | 0.0200 (9) | 0.0208 (9) | 0.0173 (9) | 0.0001 (8) | 0.0074 (8) | 0.0001 (8) |
| O1—C11 | 1.243 (2) | C2—H2 | 0.9500 |
| O2—N4 | 1.233 (2) | C3—C4 | 1.367 (3) |
| O3—N4 | 1.237 (2) | C3—H3 | 0.9500 |
| O4—N5 | 1.235 (2) | C4—C5 | 1.398 (3) |
| O5—N5 | 1.235 (2) | C4—H4 | 0.9500 |
| O6—N6 | 1.224 (2) | C6—C7 | 1.396 (3) |
| O7—N6 | 1.222 (2) | C7—C8 | 1.371 (3) |
| N1—C5 | 1.351 (2) | C7—H7 | 0.9500 |
| N1—C1 | 1.357 (2) | C8—C9 | 1.392 (3) |
| N1—H1N | 0.92 (2) | C8—H8 | 0.9500 |
| N2—C5 | 1.356 (2) | C9—C10 | 1.372 (3) |
| N2—C6 | 1.394 (2) | C9—H9 | 0.9500 |
| N2—H2N | 0.87 (2) | C10—H10 | 0.9500 |
| N3—C6 | 1.333 (2) | C11—C16 | 1.455 (3) |
| N3—C10 | 1.345 (2) | C11—C12 | 1.456 (2) |
| N4—C12 | 1.454 (2) | C12—C13 | 1.369 (2) |
| N5—C14 | 1.444 (2) | C13—C14 | 1.382 (3) |
| N6—C16 | 1.460 (2) | C13—H13 | 0.9500 |
| C1—C2 | 1.358 (3) | C14—C15 | 1.388 (3) |
| C1—H1 | 0.9500 | C15—C16 | 1.366 (2) |
| C2—C3 | 1.400 (3) | C15—H15 | 0.9500 |
| C5—N1—C1 | 122.30 (16) | N3—C6—C7 | 123.52 (17) |
| C5—N1—H1N | 113.4 (14) | N2—C6—C7 | 118.76 (17) |
| C1—N1—H1N | 124.3 (14) | C8—C7—C6 | 117.67 (18) |
| C5—N2—C6 | 128.13 (16) | C8—C7—H7 | 121.2 |
| C5—N2—H2N | 115.1 (14) | C6—C7—H7 | 121.2 |
| C6—N2—H2N | 115.7 (14) | C7—C8—C9 | 119.76 (19) |
| C6—N3—C10 | 117.47 (16) | C7—C8—H8 | 120.1 |
| O2—N4—O3 | 122.87 (16) | C9—C8—H8 | 120.1 |
| O2—N4—C12 | 119.43 (15) | C10—C9—C8 | 118.38 (19) |
| O3—N4—C12 | 117.69 (15) | C10—C9—H9 | 120.8 |
| O4—N5—O5 | 123.15 (15) | C8—C9—H9 | 120.8 |
| O4—N5—C14 | 118.32 (15) | N3—C10—C9 | 123.21 (19) |
| O5—N5—C14 | 118.53 (15) | N3—C10—H10 | 118.4 |
| O7—N6—O6 | 123.04 (17) | C9—C10—H10 | 118.4 |
| O7—N6—C16 | 118.18 (16) | O1—C11—C16 | 124.53 (16) |
| O6—N6—C16 | 118.66 (16) | O1—C11—C12 | 124.32 (16) |
| N1—C1—C2 | 120.28 (17) | C16—C11—C12 | 111.13 (15) |
| N1—C1—H1 | 119.9 | C13—C12—N4 | 116.22 (16) |
| C2—C1—H1 | 119.9 | C13—C12—C11 | 124.81 (16) |
| C1—C2—C3 | 118.75 (17) | N4—C12—C11 | 118.93 (15) |
| C1—C2—H2 | 120.6 | C12—C13—C14 | 118.97 (17) |
| C3—C2—H2 | 120.6 | C12—C13—H13 | 120.5 |
| C4—C3—C2 | 120.68 (18) | C14—C13—H13 | 120.5 |
| C4—C3—H3 | 119.7 | C13—C14—C15 | 121.12 (16) |
| C2—C3—H3 | 119.7 | C13—C14—N5 | 119.48 (16) |
| C3—C4—C5 | 119.23 (17) | C15—C14—N5 | 119.38 (16) |
| C3—C4—H4 | 120.4 | C16—C15—C14 | 119.34 (17) |
| C5—C4—H4 | 120.4 | C16—C15—H15 | 120.3 |
| N1—C5—N2 | 120.20 (16) | C14—C15—H15 | 120.3 |
| N1—C5—C4 | 118.76 (16) | C15—C16—C11 | 124.48 (16) |
| N2—C5—C4 | 121.04 (16) | C15—C16—N6 | 115.91 (16) |
| N3—C6—N2 | 117.71 (16) | C11—C16—N6 | 119.59 (15) |
| H··· | ||||
| N1—H1 | 0.92 (2) | 1.86 (2) | 2.618 (2) | 139 (2) |
| N1—H1 | 0.92 (2) | 2.45 (2) | 3.056 (2) | 123.8 (17) |
| N2—H2 | 0.87 (2) | 1.97 (2) | 2.756 (2) | 149 (2) |
| N2—H2 | 0.87 (2) | 2.42 (2) | 3.114 (2) | 136.6 (18) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.92 (2) | 1.86 (2) | 2.618 (2) | 139 (2) |
| N1—H1 | 0.92 (2) | 2.45 (2) | 3.056 (2) | 123.8 (17) |
| N2—H2 | 0.87 (2) | 1.97 (2) | 2.756 (2) | 149 (2) |
| N2—H2 | 0.87 (2) | 2.42 (2) | 3.114 (2) | 136.6 (18) |
Symmetry codes: (i) ; (ii) .