Literature DB >> 25161565

2-[(Pyridin-2-yl)amino]-pyridinium 2,4,6-tri-nitro-phenolate.

Kateryna A Ohui1, Irina A Golenya1, Nadezhda A Bokach2.   

Abstract

In the cation of the title salt, C10H10N3 (+)·C6H2N3O7 (-), the pyridine and pyridinium rings are linked by an intra-molecular N-H⋯N hydrogen bond and are approximately coplanar, with a dihedral angle between their planes of 4.24 (6)°. In the crystal, the cations and anions are linked through N-H⋯O hydrogen bonds, forming supra-molecular chains propagating along the c-axis direction. π-π stacking is observed between neighbouring chains, the centroid-centroid distances being 3.7638 (11) (between pyridinium rings) and 3.5331 (11) Å (between benzene rings).

Entities:  

Year:  2014        PMID: 25161565      PMCID: PMC4120562          DOI: 10.1107/S1600536814012835

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of picric acid and picrates, see: Shriner et al. (1980 ▶); In et al. (1997 ▶); Zaderenko et al. (1997 ▶). For related structures, see: Fritsky et al. (2006 ▶); Moroz et al. (2012 ▶); Penkova et al. (2009 ▶); Golenya et al. (2012 ▶).

Experimental

Crystal data

C10H10N3 +·C6H2N3O7 − M = 400.32 Monoclinic, a = 9.1807 (8) Å b = 14.5892 (12) Å c = 13.1649 (10) Å β = 108.925 (2)° V = 1668.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.25 × 0.21 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.974, T max = 0.983 10460 measured reflections 3253 independent reflections 2674 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.102 S = 1.03 3253 reflections 270 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814012835/xu5794sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814012835/xu5794Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814012835/xu5794Isup3.cml CCDC reference: 1006378 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H10N3+·C6H2N3O7F(000) = 824
Mr = 400.32Dx = 1.594 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3858 reflections
a = 9.1807 (8) Åθ = 2.4–29.9°
b = 14.5892 (12) ŵ = 0.13 mm1
c = 13.1649 (10) ÅT = 100 K
β = 108.925 (2)°Block, yellow
V = 1668.0 (2) Å30.25 × 0.21 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3253 independent reflections
Radiation source: fine-focus sealed tube2674 reflections with I > 2σ(I)
Horizontally mounted graphite crystal monochromatorRint = 0.029
Detector resolution: 16 pixels mm-1θmax = 26.0°, θmin = 2.2°
φ scans and ω scans with κ offseth = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2002)k = −17→16
Tmin = 0.974, Tmax = 0.983l = −16→16
10460 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0416P)2 + 1.2391P] where P = (Fo2 + 2Fc2)/3
3253 reflections(Δ/σ)max < 0.001
270 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.55 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.10222 (15)0.54091 (9)−0.17771 (10)0.0236 (3)
O2−0.06688 (18)0.69273 (10)−0.18938 (11)0.0323 (4)
O3−0.16715 (15)0.69936 (9)−0.06137 (11)0.0259 (3)
O40.15975 (16)0.63990 (10)0.29479 (10)0.0279 (3)
O50.35245 (15)0.54601 (10)0.32327 (10)0.0282 (3)
O60.46259 (16)0.40445 (10)0.03187 (11)0.0289 (3)
O70.2807 (2)0.39426 (15)−0.11952 (13)0.0702 (7)
N1−0.01574 (18)0.88497 (10)−0.04563 (12)0.0176 (3)
H1N0.079 (3)0.8656 (16)−0.0451 (18)0.036 (6)*
N20.08719 (18)0.86091 (11)0.14029 (12)0.0199 (3)
H2N0.075 (2)0.8730 (15)0.2019 (18)0.027 (6)*
N30.26368 (18)0.82539 (11)0.05248 (12)0.0213 (4)
N4−0.06696 (18)0.67256 (11)−0.09846 (12)0.0212 (3)
N50.24186 (18)0.58829 (11)0.26247 (12)0.0210 (4)
N60.3395 (2)0.42975 (12)−0.03160 (13)0.0288 (4)
C1−0.1325 (2)0.90766 (13)−0.13575 (14)0.0206 (4)
H1−0.11660.9064−0.20350.025*
C2−0.2720 (2)0.93213 (13)−0.12947 (15)0.0232 (4)
H2−0.35410.9481−0.19230.028*
C3−0.2925 (2)0.93344 (13)−0.02863 (15)0.0238 (4)
H3−0.38940.9507−0.02300.029*
C4−0.1746 (2)0.91021 (13)0.06177 (15)0.0216 (4)
H4−0.18890.91130.13000.026*
C5−0.0325 (2)0.88481 (12)0.05260 (14)0.0173 (4)
C60.2352 (2)0.83475 (12)0.14498 (15)0.0192 (4)
C70.3446 (2)0.81826 (13)0.24528 (15)0.0242 (4)
H70.32020.82580.30960.029*
C80.4886 (2)0.79074 (14)0.24768 (17)0.0292 (5)
H80.56620.77910.31440.035*
C90.5205 (2)0.77997 (14)0.15200 (18)0.0304 (5)
H90.61930.76040.15220.036*
C100.4057 (2)0.79824 (14)0.05736 (17)0.0278 (5)
H100.42770.7914−0.00790.033*
C110.1351 (2)0.55224 (12)−0.07926 (14)0.0170 (4)
C120.0569 (2)0.61648 (12)−0.02980 (14)0.0171 (4)
C130.0877 (2)0.62673 (12)0.07851 (14)0.0176 (4)
H130.02820.66740.10550.021*
C140.2068 (2)0.57704 (12)0.14803 (14)0.0180 (4)
C150.2908 (2)0.51464 (13)0.10980 (14)0.0188 (4)
H150.37310.48140.15840.023*
C160.2538 (2)0.50156 (12)0.00165 (14)0.0190 (4)
U11U22U33U12U13U23
O10.0346 (8)0.0227 (7)0.0129 (6)0.0057 (6)0.0068 (6)0.0021 (6)
O20.0471 (9)0.0303 (8)0.0171 (7)0.0138 (7)0.0070 (6)0.0061 (6)
O30.0236 (7)0.0218 (7)0.0316 (8)0.0031 (6)0.0082 (6)−0.0005 (6)
O40.0306 (8)0.0354 (8)0.0201 (7)−0.0002 (6)0.0116 (6)−0.0062 (6)
O50.0250 (7)0.0407 (9)0.0158 (7)0.0015 (6)0.0021 (6)0.0036 (6)
O60.0269 (8)0.0336 (8)0.0272 (7)0.0120 (6)0.0102 (6)0.0095 (6)
O70.0931 (15)0.0786 (14)0.0221 (9)0.0595 (12)−0.0045 (9)−0.0153 (9)
N10.0190 (8)0.0170 (8)0.0162 (8)−0.0009 (6)0.0052 (6)−0.0003 (6)
N20.0224 (8)0.0240 (8)0.0132 (8)0.0013 (7)0.0056 (6)−0.0013 (7)
N30.0222 (8)0.0207 (8)0.0215 (8)−0.0001 (7)0.0076 (7)−0.0024 (7)
N40.0242 (8)0.0166 (8)0.0195 (8)−0.0003 (7)0.0026 (7)−0.0029 (7)
N50.0212 (8)0.0256 (8)0.0161 (8)−0.0062 (7)0.0060 (7)−0.0018 (7)
N60.0354 (10)0.0328 (10)0.0180 (8)0.0142 (8)0.0084 (7)0.0023 (8)
C10.0252 (10)0.0201 (9)0.0147 (9)−0.0021 (8)0.0041 (7)0.0006 (8)
C20.0225 (10)0.0226 (10)0.0213 (10)0.0005 (8)0.0025 (8)0.0025 (8)
C30.0215 (10)0.0228 (10)0.0271 (10)0.0009 (8)0.0079 (8)−0.0010 (8)
C40.0255 (10)0.0215 (10)0.0191 (9)−0.0008 (8)0.0092 (8)−0.0023 (8)
C50.0228 (10)0.0128 (8)0.0155 (9)−0.0028 (7)0.0051 (7)−0.0021 (7)
C60.0207 (9)0.0141 (9)0.0203 (9)−0.0014 (7)0.0034 (7)−0.0025 (7)
C70.0271 (10)0.0220 (10)0.0197 (9)−0.0001 (8)0.0023 (8)−0.0029 (8)
C80.0252 (11)0.0229 (10)0.0302 (11)0.0018 (8)−0.0036 (8)−0.0031 (9)
C90.0208 (10)0.0276 (11)0.0399 (12)0.0017 (8)0.0059 (9)−0.0076 (10)
C100.0273 (11)0.0266 (11)0.0316 (11)0.0019 (9)0.0124 (9)−0.0043 (9)
C110.0199 (9)0.0150 (9)0.0154 (9)−0.0033 (7)0.0049 (7)0.0012 (7)
C120.0171 (9)0.0147 (9)0.0178 (9)−0.0023 (7)0.0032 (7)0.0002 (7)
C130.0182 (9)0.0160 (9)0.0196 (9)−0.0043 (7)0.0074 (7)−0.0022 (7)
C140.0192 (9)0.0209 (9)0.0140 (9)−0.0046 (7)0.0057 (7)−0.0019 (7)
C150.0156 (9)0.0222 (9)0.0172 (9)−0.0014 (7)0.0034 (7)0.0022 (8)
C160.0200 (9)0.0208 (9)0.0173 (9)0.0001 (8)0.0074 (8)0.0001 (8)
O1—C111.243 (2)C2—H20.9500
O2—N41.233 (2)C3—C41.367 (3)
O3—N41.237 (2)C3—H30.9500
O4—N51.235 (2)C4—C51.398 (3)
O5—N51.235 (2)C4—H40.9500
O6—N61.224 (2)C6—C71.396 (3)
O7—N61.222 (2)C7—C81.371 (3)
N1—C51.351 (2)C7—H70.9500
N1—C11.357 (2)C8—C91.392 (3)
N1—H1N0.92 (2)C8—H80.9500
N2—C51.356 (2)C9—C101.372 (3)
N2—C61.394 (2)C9—H90.9500
N2—H2N0.87 (2)C10—H100.9500
N3—C61.333 (2)C11—C161.455 (3)
N3—C101.345 (2)C11—C121.456 (2)
N4—C121.454 (2)C12—C131.369 (2)
N5—C141.444 (2)C13—C141.382 (3)
N6—C161.460 (2)C13—H130.9500
C1—C21.358 (3)C14—C151.388 (3)
C1—H10.9500C15—C161.366 (2)
C2—C31.400 (3)C15—H150.9500
C5—N1—C1122.30 (16)N3—C6—C7123.52 (17)
C5—N1—H1N113.4 (14)N2—C6—C7118.76 (17)
C1—N1—H1N124.3 (14)C8—C7—C6117.67 (18)
C5—N2—C6128.13 (16)C8—C7—H7121.2
C5—N2—H2N115.1 (14)C6—C7—H7121.2
C6—N2—H2N115.7 (14)C7—C8—C9119.76 (19)
C6—N3—C10117.47 (16)C7—C8—H8120.1
O2—N4—O3122.87 (16)C9—C8—H8120.1
O2—N4—C12119.43 (15)C10—C9—C8118.38 (19)
O3—N4—C12117.69 (15)C10—C9—H9120.8
O4—N5—O5123.15 (15)C8—C9—H9120.8
O4—N5—C14118.32 (15)N3—C10—C9123.21 (19)
O5—N5—C14118.53 (15)N3—C10—H10118.4
O7—N6—O6123.04 (17)C9—C10—H10118.4
O7—N6—C16118.18 (16)O1—C11—C16124.53 (16)
O6—N6—C16118.66 (16)O1—C11—C12124.32 (16)
N1—C1—C2120.28 (17)C16—C11—C12111.13 (15)
N1—C1—H1119.9C13—C12—N4116.22 (16)
C2—C1—H1119.9C13—C12—C11124.81 (16)
C1—C2—C3118.75 (17)N4—C12—C11118.93 (15)
C1—C2—H2120.6C12—C13—C14118.97 (17)
C3—C2—H2120.6C12—C13—H13120.5
C4—C3—C2120.68 (18)C14—C13—H13120.5
C4—C3—H3119.7C13—C14—C15121.12 (16)
C2—C3—H3119.7C13—C14—N5119.48 (16)
C3—C4—C5119.23 (17)C15—C14—N5119.38 (16)
C3—C4—H4120.4C16—C15—C14119.34 (17)
C5—C4—H4120.4C16—C15—H15120.3
N1—C5—N2120.20 (16)C14—C15—H15120.3
N1—C5—C4118.76 (16)C15—C16—C11124.48 (16)
N2—C5—C4121.04 (16)C15—C16—N6115.91 (16)
N3—C6—N2117.71 (16)C11—C16—N6119.59 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.92 (2)1.86 (2)2.618 (2)139 (2)
N1—H1N···O4i0.92 (2)2.45 (2)3.056 (2)123.8 (17)
N2—H2N···O1ii0.87 (2)1.97 (2)2.756 (2)149 (2)
N2—H2N···O2ii0.87 (2)2.42 (2)3.114 (2)136.6 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯N30.92 (2)1.86 (2)2.618 (2)139 (2)
N1—H1N⋯O4i 0.92 (2)2.45 (2)3.056 (2)123.8 (17)
N2—H2N⋯O1ii 0.87 (2)1.97 (2)2.756 (2)149 (2)
N2—H2N⋯O2ii 0.87 (2)2.42 (2)3.114 (2)136.6 (18)

Symmetry codes: (i) ; (ii) .

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