Literature DB >> 25161528

catena-Poly[[(pyrazine-2-carboxamide-κN (4))copper(I)]-μ3-iodido].

Lukáš Krivosudský1, Erik Rakovský1.   

Abstract

In the title metal-organic polymeric complex, [CuI(C5H5N3O)] n , the asymmetric unit is composed of one monomer unit of the polymer and one Cu(I) atom linked to one iodide anion and one pyrazine-2-carboxamide mol-ecule. The Cu(I) atom is in a distorted tetra-hedral coordination completed by one pyrazine N atom of the pyrazine-2-carboxamide ligand and three iodide anions. The polymeric structure adopts a well-known ladder-like motif of {CuNI3} tetra-hedra running in the b-axis direction. The mol-ecules of the organic ligand are connected via medium-to-strong N-H⋯O and N-H⋯N hydrogen bonds and weak π-π inter-actions [the distance between two parallel planes of the rings is 3.5476 (14) Å and the centroid-centroid contact is 4.080 (2) Å]. The title compound has a relatively high decomposition temperature (564 K) as a result of relatively strong covalent and non-covalent inter-actions inside and between the chains.

Entities:  

Year:  2014        PMID: 25161528      PMCID: PMC4120587          DOI: 10.1107/S1600536814013695

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other CuI coordination polymers, see: Peng et al. (2006 ▶, 2010 ▶); Feng et al. (2006 ▶); Wu et al. (2005 ▶); Rath & Holt (1985 ▶); Rath et al. (1986 ▶). For complexes of pyrazine-2-carboxamide with other transition metals and studies of their biological activity, see: Somoskovi et al. (2004 ▶); Singh & Seth (1975 ▶); Azizov et al. (1978 ▶). For other CuI complexes of pyrazine-2-carboxamide, see: Munakata et al. (1997 ▶); Goher & Mautner (1999 ▶, 2000 ▶, 2001 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For non-covalent inter­actions, see: Bernstein et al. (1995 ▶); Bondi (1964 ▶); Janiak (2000 ▶); Jia et al. (2009 ▶); Wells (1975 ▶). For the riding constraints used in the refinement, see: Cooper et al. (2010 ▶).

Experimental

Crystal data

[CuI(C5H5N3O)] M = 313.56 Monoclinic, a = 29.5408 (7) Å b = 4.0795 (1) Å c = 14.3164 (3) Å β = 111.712 (3)° V = 1602.89 (7) Å3 Z = 8 Mo Kα radiation μ = 6.52 mm−1 T = 100 K 0.22 × 0.06 × 0.03 mm

Data collection

Agilent SuperNova diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.562, T max = 1.000 11538 measured reflections 2135 independent reflections 1339 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.042 S = 1.00 1556 reflections 100 parameters H-atom parameters constrained Δρmax = 0.96 e Å−3 Δρmin = −0.87 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶), Mercury (Macrae et al., 2006 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: CRYSTALS, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814013695/vn2084sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013695/vn2084Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013695/vn2084Isup3.mol CCDC reference: 885829 Additional supporting information: crystallographic information; 3D view; checkCIF report
[CuI(C5H5N3O)]F(000) = 1168
Mr = 313.56Dx = 2.599 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6637 reflections
a = 29.5408 (7) Åθ = 2–30°
b = 4.0795 (1) ŵ = 6.52 mm1
c = 14.3164 (3) ÅT = 100 K
β = 111.712 (3)°Needle, red
V = 1602.89 (7) Å30.22 × 0.06 × 0.03 mm
Z = 8
Agilent SuperNova diffractometer2135 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1339 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.024
Detector resolution: 10.3801 pixels mm-1θmax = 29.2°, θmin = 2.9°
ω scansh = −40→37
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −5→5
Tmin = 0.562, Tmax = 1.000l = −19→14
11538 measured reflections
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: difference Fourier map
wR(F2) = 0.042H-atom parameters constrained
S = 1.00 Method = Modified Sheldrick w = 1/[σ2(F2) + 6.36P] where P = (max(Fo2,0) + 2Fc2)/3
1556 reflections(Δ/σ)max = 0.001
100 parametersΔρmax = 0.96 e Å3
0 restraintsΔρmin = −0.87 e Å3
Experimental. Absorption correction: CrysAlis PRO (Agilent, 2012) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
xyzUiso*/Ueq
I10.220190 (8)0.31394 (6)0.101635 (17)0.0111
Cu10.268365 (16)0.80730 (12)0.20718 (3)0.0128
N10.33830 (11)0.8564 (7)0.2104 (2)0.0107
C20.37134 (13)1.0182 (9)0.2869 (3)0.0127
C10.41814 (13)1.0748 (9)0.2896 (3)0.0111
N20.43237 (11)0.9779 (7)0.2156 (2)0.0142
C40.39912 (14)0.8216 (10)0.1390 (3)0.0156
C30.35231 (13)0.7580 (8)0.1366 (3)0.0117
C50.45324 (13)1.2545 (8)0.3789 (3)0.0123
O10.43762 (9)1.3879 (7)0.4387 (2)0.0187
N30.49934 (11)1.2586 (7)0.3874 (2)0.0171
H210.36251.09510.33970.0157*
H410.40760.75450.08530.0177*
H310.33050.64490.08250.0152*
H3110.52041.35470.43650.0212*
H3120.50941.15270.34640.0198*
U11U22U33U12U13U23
I10.01335 (12)0.00921 (12)0.00965 (12)−0.00022 (11)0.00295 (9)−0.00083 (11)
Cu10.0102 (2)0.0136 (2)0.0134 (2)−0.0017 (2)0.00299 (18)−0.0011 (2)
N10.0123 (16)0.0075 (16)0.0123 (16)−0.0001 (13)0.0044 (13)0.0031 (13)
C20.0143 (19)0.012 (2)0.0126 (19)0.0009 (16)0.0056 (16)0.0001 (16)
C10.0106 (18)0.0130 (18)0.0091 (18)0.0028 (15)0.0029 (15)0.0056 (15)
N20.0131 (16)0.0161 (18)0.0129 (16)−0.0003 (14)0.0042 (14)−0.0014 (14)
C40.018 (2)0.0193 (19)0.0108 (18)0.0037 (18)0.0071 (16)0.0004 (18)
C30.0113 (18)0.009 (2)0.0102 (18)−0.0003 (14)−0.0013 (15)0.0010 (14)
C50.0119 (19)0.011 (2)0.0125 (19)−0.0009 (14)0.0023 (15)0.0004 (15)
O10.0128 (14)0.0252 (17)0.0194 (15)−0.0049 (12)0.0074 (12)−0.0105 (12)
N30.0142 (17)0.021 (2)0.0162 (17)−0.0036 (14)0.0056 (14)−0.0092 (14)
I1—Cu1i2.6437 (5)C1—N21.336 (5)
I1—Cu1ii2.6310 (5)C1—C51.505 (5)
I1—Cu12.6016 (5)N2—C41.333 (5)
Cu1—N12.059 (3)C4—C31.394 (5)
Cu1—Cu1ii2.7974 (6)C4—H410.933
Cu1—Cu1iii2.7974 (6)C3—H310.927
N1—C21.341 (5)C5—O11.240 (4)
N1—C31.331 (5)C5—N31.321 (5)
C2—C11.388 (5)N3—H3110.843
C2—H210.939N3—H3120.866
Cu1i—I1—Cu1ii64.057 (14)C2—N1—C3116.8 (3)
Cu1i—I1—Cu1102.106 (17)N1—C2—C1121.4 (3)
Cu1ii—I1—Cu164.633 (14)N1—C2—H21119.2
Cu1ii—Cu1—Cu1iii93.63 (3)C1—C2—H21119.4
Cu1ii—Cu1—I1iv127.34 (3)C2—C1—N2122.1 (3)
Cu1iii—Cu1—I1iv57.750 (12)C2—C1—C5118.1 (3)
Cu1ii—Cu1—I1iii58.193 (19)N2—C1—C5119.8 (3)
Cu1iii—Cu1—I1iii57.174 (19)C1—N2—C4116.2 (3)
I1iv—Cu1—I1iii114.921 (19)N2—C4—C3122.1 (3)
Cu1ii—Cu1—I158.193 (12)N2—C4—H41118.5
Cu1iii—Cu1—I1126.95 (3)C3—C4—H41119.3
I1iv—Cu1—I1102.106 (17)C4—C3—N1121.4 (3)
I1iii—Cu1—I1116.38 (2)C4—C3—H31119.5
Cu1ii—Cu1—N1127.58 (8)N1—C3—H31119.2
Cu1iii—Cu1—N1117.90 (8)C1—C5—O1119.0 (3)
I1iv—Cu1—N1105.07 (8)C1—C5—N3116.6 (3)
I1iii—Cu1—N1103.54 (8)O1—C5—N3124.4 (3)
I1—Cu1—N1114.64 (8)C5—N3—H311120.0
Cu1—N1—C2119.1 (2)C5—N3—H312122.1
Cu1—N1—C3123.9 (2)H311—N3—H312117.7
D—H···AD—HH···AD···AD—H···A
N3—H311···O1v0.842.052.883 (5)170 (1)
N3—H312···N2vi0.872.323.124 (5)154 (1)
Table 1

Selected bond lengths (Å)

I1—Cu1i 2.6437 (5)
I1—Cu1ii 2.6310 (5)
I1—Cu12.6016 (5)
Cu1—N12.059 (3)
Cu1—Cu1ii 2.7974 (6)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H311⋯O1iii 0.842.052.883 (5)170 (1)
N3—H312⋯N2iv 0.872.323.124 (5)154 (1)

Symmetry codes: (iii) ; (iv) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Increasing structure dimensionality of copper(I) complexes by varying the flexible thioether ligand geometry and counteranions.

Authors:  Rong Peng; Dan Li; Tao Wu; Xiao-Ping Zhou; Seik Weng Ng
Journal:  Inorg Chem       Date:  2006-05-15       Impact factor: 5.165

3.  Iron enhances the antituberculous activity of pyrazinamide.

Authors:  Akos Somoskovi; Mary Margaret Wade; Zhonghe Sun; Ying Zhang
Journal:  J Antimicrob Chemother       Date:  2004-01-16       Impact factor: 5.790

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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