| Literature DB >> 25161498 |
Dilovan S Cati1, Helen Stoeckli-Evans2.
Abstract
The title compound, [Cu(C11H9N4O)(CH3CO2)]·2H2O (CuL), is a hydrated copper acetate complex of the ligand N-[(pyridin-4-yl)meth-yl]pyrazine-2-carboxamide (HL). Complex CuL has a metal-organic framework (MOF) structure with a 10 (3) network topology. The ligand coordinates in a bidentate and a bis-monodentate manner, bridging three equivalent Cu(II) atoms via the pyridine N atom and the second pyrazine N atom. The Cu(II) atom has a fivefold coordination sphere, CuN4O, being coordinated to three N atoms of the ligand and the acetate O atom in the equatorial plane and to the second pyrazine atom in the apical position. This gives rise to a fairly regular square-pyramidal geometry. In the crystal, the water mol-ecules are linked to each other and to the three-dimensional framework via O-H⋯O hydrogen bonds. There are also a number of C-H⋯O hydrogen bonds present within the framework.Entities:
Keywords: 10 (3) network topology; copper(II); crystal structure; metal-organic framework; pyrazine-2-carboxamide
Year: 2014 PMID: 25161498 PMCID: PMC4120597 DOI: 10.1107/S1600536814011520
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1A view of the asymmetric unit of complex CuL, with atom labelling [symmetry codes: (i) x, −y, z − ; (ii) x − , −y + , z − ; (iii) x + , −y + , z + ; (iv) x, −y, z + ]. Displacement ellipsoids are drawn at the 50% probability level.
Figure 2A view along the a axis of the metal–organic framework (MOF) structure of complex CuL. Solvent water molecules and H atoms have been omitted for clarity.
Figure 3A view of the 10 (3) network topology of the title metal–organic framework (MOF) structure, illustrating the 3-connected three-dimensional nets with ten-membered rings.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.84 (3) | 2.13 (5) | 2.908 (9) | 154 (9) |
| O1 | 0.84 (3) | 2.23 (5) | 2.964 (10) | 146 (8) |
| O2 | 0.86 (3) | 2.11 (4) | 2.951 (10) | 165 (10) |
| O2 | 0.85 (3) | 2.20 (3) | 3.033 (8) | 169 (10) |
| C2—H2⋯O2v | 0.95 | 2.37 | 2.987 (13) | 123 |
| C8—H8⋯O3vi | 0.95 | 2.57 | 3.364 (11) | 141 |
| C9—H9⋯O2 | 0.95 | 2.50 | 3.358 (12) | 151 |
Symmetry codes: (i) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .
Figure 4A view along the c axis of the crystal packing of complex CuL, with the hydrogen bonds involving the water molecules shown as dashed lines (see Table 1 ▶ for details; H atoms not involved in these hydrogen bonding have been omitted for clarity).
Experimental details
| Crystal data | |
| Chemical formula | [Cu(C11H9N4O)(C2H3O2)]·2H2O |
|
| 371.84 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 153 |
|
| 7.8256 (12), 22.331 (2), 8.9976 (13) |
| β (°) | 110.040 (16) |
|
| 1477.2 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.51 |
| Crystal size (mm) | 0.40 × 0.30 × 0.30 |
| Data collection | |
| Diffractometer | Stoe |
| Absorption correction | Multi-scan ( |
|
| 0.979, 1.000 |
| No. of measured, independent and observed [ | 5730, 2705, 1778 |
|
| 0.070 |
| (sin θ/λ)max (Å−1) | 0.615 |
| Refinement | |
|
| 0.040, 0.072, 0.78 |
| No. of reflections | 2705 |
| No. of parameters | 203 |
| No. of restraints | 8 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.40, −0.59 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.01 (3) |
Computer programs: EXPOSE in IPDSI, CELL and INTEGRATE in IPDSI (Stoe & Cie, 2004 ▶), SHELXS97 and SHELXL2013 (Sheldrick, 2008 ▶), Mercury (Macrae et al., 2008 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶).
| [Cu(C11H9N4O)(C2H3O2)]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2705 reflections |
| θ = 2.1–26.1° | |
| µ = 1.51 mm−1 | |
| β = 110.040 (16)° | Block, turquoise blue |
| 0.40 × 0.30 × 0.30 mm | |
| Stoe IPDS I diffractometer | 2705 independent reflections |
| Radiation source: fine-focus sealed tube | 1778 reflections with |
| Plane graphite monochromator | |
| φ rotation scans | θmax = 25.9°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 5730 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2705 reflections | Δρmax = 0.40 e Å−3 |
| 203 parameters | Δρmin = −0.59 e Å−3 |
| 8 restraints | Absolute structure: Flack |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.01 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cu1 | 0.44720 (19) | 0.13211 (4) | 0.83884 (18) | 0.0155 (2) | |
| O1 | 0.3072 (8) | 0.1995 (2) | 1.2004 (7) | 0.0248 (16) | |
| O2 | 0.5973 (10) | 0.1326 (3) | 0.7054 (9) | 0.0169 (15) | |
| O3 | 0.7386 (8) | 0.0439 (3) | 0.7464 (8) | 0.0266 (15) | |
| N1 | 0.5958 (11) | 0.1988 (3) | 0.9695 (9) | 0.0155 (9) | |
| N2 | 0.7658 (12) | 0.2933 (3) | 1.1646 (9) | 0.0155 (9) | |
| N3 | 0.3109 (12) | 0.1421 (4) | 0.9844 (11) | 0.0155 (9) | |
| N4 | 0.3255 (10) | −0.0570 (3) | 1.2361 (9) | 0.0155 (9) | |
| C1 | 0.7378 (15) | 0.2255 (5) | 0.9510 (12) | 0.018 (3) | |
| H1 | 0.7839 | 0.2120 | 0.8720 | 0.022* | |
| C2 | 0.8206 (16) | 0.2742 (5) | 1.0483 (12) | 0.018 (3) | |
| H2 | 0.9191 | 0.2940 | 1.0304 | 0.021* | |
| C3 | 0.6208 (15) | 0.2647 (4) | 1.1831 (13) | 0.015 (2) | |
| H3 | 0.5771 | 0.2774 | 1.2644 | 0.018* | |
| C4 | 0.5351 (15) | 0.2174 (5) | 1.0852 (11) | 0.014 (2) | |
| C5 | 0.3707 (11) | 0.1848 (3) | 1.0932 (10) | 0.0146 (19) | |
| C6 | 0.1512 (13) | 0.1078 (4) | 0.9801 (12) | 0.015 (2) | |
| H6A | 0.0774 | 0.0987 | 0.8689 | 0.018* | |
| H6B | 0.0757 | 0.1320 | 1.0262 | 0.018* | |
| C7 | 0.2058 (11) | 0.0497 (3) | 1.0721 (11) | 0.0124 (17) | |
| C8 | 0.1360 (11) | −0.0045 (4) | 1.0059 (11) | 0.020 (2) | |
| H8 | 0.0425 | −0.0061 | 0.9053 | 0.024* | |
| C9 | 0.2044 (13) | −0.0571 (4) | 1.0884 (13) | 0.020 (2) | |
| H9 | 0.1638 | −0.0944 | 1.0381 | 0.024* | |
| C10 | 0.3872 (11) | −0.0036 (3) | 1.3001 (11) | 0.019 (2) | |
| H10 | 0.4747 | −0.0028 | 1.4039 | 0.023* | |
| C11 | 0.3310 (12) | 0.0503 (4) | 1.2239 (10) | 0.016 (2) | |
| H11 | 0.3775 | 0.0871 | 1.2748 | 0.019* | |
| C12 | 0.6927 (13) | 0.0907 (5) | 0.6705 (13) | 0.016 (2) | |
| C13 | 0.7531 (12) | 0.1058 (4) | 0.5323 (10) | 0.024 (2) | |
| H13A | 0.7724 | 0.0687 | 0.4820 | 0.035* | |
| H13B | 0.8669 | 0.1285 | 0.5701 | 0.035* | |
| H13C | 0.6591 | 0.1298 | 0.4552 | 0.035* | |
| O1W | 0.7662 (12) | 0.0650 (3) | 0.0791 (10) | 0.0313 (19) | |
| H1WA | 0.764 (17) | 0.042 (4) | 0.151 (8) | 0.047* | |
| H1WB | 0.752 (15) | 0.044 (4) | −0.002 (7) | 0.047* | |
| O2W | 0.9960 (9) | 0.1546 (3) | 0.2989 (8) | 0.0358 (18) | |
| H2WA | 0.925 (10) | 0.134 (4) | 0.222 (8) | 0.054* | |
| H2WB | 1.072 (10) | 0.169 (4) | 0.261 (10) | 0.054* |
| Cu1 | 0.0184 (5) | 0.0119 (4) | 0.0183 (5) | −0.0019 (8) | 0.0092 (4) | −0.0025 (8) |
| O1 | 0.032 (4) | 0.021 (3) | 0.032 (4) | −0.011 (3) | 0.025 (4) | −0.013 (3) |
| O2 | 0.023 (4) | 0.008 (3) | 0.023 (4) | 0.000 (3) | 0.012 (3) | −0.004 (3) |
| O3 | 0.025 (4) | 0.019 (3) | 0.037 (5) | 0.009 (3) | 0.013 (3) | 0.005 (3) |
| N1 | 0.018 (2) | 0.0133 (18) | 0.018 (2) | −0.0018 (16) | 0.009 (2) | 0.0013 (17) |
| N2 | 0.018 (2) | 0.0133 (18) | 0.018 (2) | −0.0018 (16) | 0.009 (2) | 0.0013 (17) |
| N3 | 0.018 (2) | 0.0133 (18) | 0.018 (2) | −0.0018 (16) | 0.009 (2) | 0.0013 (17) |
| N4 | 0.018 (2) | 0.0133 (18) | 0.018 (2) | −0.0018 (16) | 0.009 (2) | 0.0013 (17) |
| C1 | 0.017 (6) | 0.017 (5) | 0.020 (6) | −0.004 (4) | 0.007 (5) | −0.002 (5) |
| C2 | 0.019 (6) | 0.022 (6) | 0.016 (6) | −0.003 (5) | 0.011 (5) | −0.001 (5) |
| C3 | 0.018 (6) | 0.014 (5) | 0.016 (6) | −0.005 (4) | 0.012 (5) | −0.001 (4) |
| C4 | 0.023 (6) | 0.010 (5) | 0.012 (5) | −0.005 (4) | 0.010 (5) | 0.001 (4) |
| C5 | 0.015 (5) | 0.016 (4) | 0.014 (5) | −0.002 (3) | 0.006 (4) | 0.001 (4) |
| C6 | 0.013 (6) | 0.010 (5) | 0.021 (6) | −0.002 (4) | 0.004 (5) | 0.003 (4) |
| C7 | 0.011 (4) | 0.009 (4) | 0.018 (5) | 0.002 (3) | 0.006 (4) | 0.006 (4) |
| C8 | 0.012 (5) | 0.020 (4) | 0.027 (6) | 0.001 (4) | 0.005 (4) | 0.000 (4) |
| C9 | 0.020 (5) | 0.012 (5) | 0.028 (7) | −0.004 (4) | 0.009 (5) | 0.002 (4) |
| C10 | 0.024 (6) | 0.017 (4) | 0.017 (6) | 0.000 (3) | 0.009 (5) | 0.002 (4) |
| C11 | 0.023 (5) | 0.007 (4) | 0.018 (5) | −0.003 (4) | 0.008 (5) | −0.004 (4) |
| C12 | 0.007 (5) | 0.022 (6) | 0.019 (6) | 0.001 (4) | 0.004 (5) | 0.001 (5) |
| C13 | 0.019 (5) | 0.035 (5) | 0.022 (6) | 0.004 (4) | 0.014 (5) | −0.003 (4) |
| O1W | 0.047 (5) | 0.019 (4) | 0.033 (5) | −0.002 (4) | 0.019 (5) | 0.001 (3) |
| O2W | 0.042 (5) | 0.038 (4) | 0.034 (5) | −0.007 (3) | 0.022 (4) | −0.006 (3) |
| Cu1—O2 | 1.947 (7) | C3—H3 | 0.9500 |
| Cu1—N3 | 1.964 (9) | C4—C5 | 1.500 (13) |
| Cu1—N4i | 1.993 (7) | C6—C7 | 1.520 (11) |
| Cu1—N1 | 2.003 (8) | C6—H6A | 0.9900 |
| Cu1—N2ii | 2.393 (8) | C6—H6B | 0.9900 |
| O1—C5 | 1.270 (9) | C7—C8 | 1.376 (11) |
| O2—C12 | 1.300 (12) | C7—C11 | 1.382 (12) |
| O3—C12 | 1.232 (11) | C8—C9 | 1.395 (13) |
| N1—C1 | 1.323 (13) | C8—H8 | 0.9500 |
| N1—C4 | 1.349 (12) | C9—H9 | 0.9500 |
| N2—C2 | 1.330 (13) | C10—C11 | 1.381 (11) |
| N2—C3 | 1.360 (13) | C10—H10 | 0.9500 |
| N2—Cu1iii | 2.393 (8) | C11—H11 | 0.9500 |
| N3—C5 | 1.332 (11) | C12—C13 | 1.512 (12) |
| N3—C6 | 1.455 (13) | C13—H13A | 0.9800 |
| N4—C10 | 1.341 (10) | C13—H13B | 0.9800 |
| N4—C9 | 1.342 (13) | C13—H13C | 0.9800 |
| N4—Cu1iv | 1.992 (7) | O1W—H1WA | 0.84 (3) |
| C1—C2 | 1.405 (14) | O1W—H1WB | 0.84 (3) |
| C1—H1 | 0.9500 | O2W—H2WA | 0.86 (3) |
| C2—H2 | 0.9500 | O2W—H2WB | 0.85 (3) |
| C3—C4 | 1.393 (13) | ||
| O2—Cu1—N3 | 172.2 (3) | O1—C5—N3 | 127.8 (8) |
| O2—Cu1—N4i | 90.7 (3) | O1—C5—C4 | 118.5 (8) |
| N3—Cu1—N4i | 97.0 (3) | N3—C5—C4 | 113.7 (8) |
| O2—Cu1—N1 | 90.4 (3) | N3—C6—C7 | 110.9 (8) |
| N3—Cu1—N1 | 82.1 (4) | N3—C6—H6A | 109.5 |
| N4i—Cu1—N1 | 170.6 (3) | C7—C6—H6A | 109.5 |
| O2—Cu1—N2ii | 86.5 (3) | N3—C6—H6B | 109.5 |
| N3—Cu1—N2ii | 91.3 (3) | C7—C6—H6B | 109.5 |
| N4i—Cu1—N2ii | 101.5 (3) | H6A—C6—H6B | 108.0 |
| N1—Cu1—N2ii | 87.8 (2) | C8—C7—C11 | 118.6 (8) |
| C12—O2—Cu1 | 131.5 (6) | C8—C7—C6 | 121.3 (8) |
| C1—N1—C4 | 119.4 (8) | C11—C7—C6 | 120.1 (8) |
| C1—N1—Cu1 | 127.3 (7) | C7—C8—C9 | 119.2 (9) |
| C4—N1—Cu1 | 113.3 (7) | C7—C8—H8 | 120.4 |
| C2—N2—C3 | 116.9 (9) | C9—C8—H8 | 120.4 |
| C2—N2—Cu1iii | 117.4 (7) | N4—C9—C8 | 122.6 (9) |
| C3—N2—Cu1iii | 125.3 (7) | N4—C9—H9 | 118.7 |
| C5—N3—C6 | 118.6 (9) | C8—C9—H9 | 118.7 |
| C5—N3—Cu1 | 115.9 (6) | N4—C10—C11 | 123.8 (8) |
| C6—N3—Cu1 | 125.5 (7) | N4—C10—H10 | 118.1 |
| C10—N4—C9 | 117.0 (7) | C11—C10—H10 | 118.1 |
| C10—N4—Cu1iv | 120.3 (6) | C10—C11—C7 | 118.6 (8) |
| C9—N4—Cu1iv | 121.4 (6) | C10—C11—H11 | 120.7 |
| N1—C1—C2 | 119.9 (10) | C7—C11—H11 | 120.7 |
| N1—C1—H1 | 120.0 | O3—C12—O2 | 124.0 (9) |
| C2—C1—H1 | 120.0 | O3—C12—C13 | 122.0 (9) |
| N2—C2—C1 | 122.3 (10) | O2—C12—C13 | 113.9 (8) |
| N2—C2—H2 | 118.9 | C12—C13—H13A | 109.5 |
| C1—C2—H2 | 118.9 | C12—C13—H13B | 109.5 |
| N2—C3—C4 | 121.3 (10) | H13A—C13—H13B | 109.5 |
| N2—C3—H3 | 119.3 | C12—C13—H13C | 109.5 |
| C4—C3—H3 | 119.3 | H13A—C13—H13C | 109.5 |
| N1—C4—C3 | 120.1 (10) | H13B—C13—H13C | 109.5 |
| N1—C4—C5 | 115.0 (8) | H1WA—O1W—H1WB | 107 (4) |
| C3—C4—C5 | 124.9 (9) | H2WA—O2W—H2WB | 104 (4) |
| C4—N1—C1—C2 | −2.0 (14) | N1—C4—C5—N3 | 0.4 (12) |
| Cu1—N1—C1—C2 | 176.4 (8) | C3—C4—C5—N3 | 178.4 (10) |
| C3—N2—C2—C1 | −1.9 (15) | C5—N3—C6—C7 | −95.5 (10) |
| Cu1iii—N2—C2—C1 | 172.1 (9) | Cu1—N3—C6—C7 | 85.8 (10) |
| N1—C1—C2—N2 | 2.8 (17) | N3—C6—C7—C8 | −128.6 (9) |
| C2—N2—C3—C4 | 0.5 (14) | N3—C6—C7—C11 | 49.7 (12) |
| Cu1iii—N2—C3—C4 | −173.0 (8) | C11—C7—C8—C9 | −5.2 (12) |
| C1—N1—C4—C3 | 0.5 (14) | C6—C7—C8—C9 | 173.2 (8) |
| Cu1—N1—C4—C3 | −178.0 (8) | C10—N4—C9—C8 | −3.5 (12) |
| C1—N1—C4—C5 | 178.7 (9) | Cu1iv—N4—C9—C8 | −171.0 (7) |
| Cu1—N1—C4—C5 | 0.1 (11) | C7—C8—C9—N4 | 5.7 (13) |
| N2—C3—C4—N1 | 0.2 (16) | C9—N4—C10—C11 | 1.1 (11) |
| N2—C3—C4—C5 | −177.7 (9) | Cu1iv—N4—C10—C11 | 168.8 (6) |
| C6—N3—C5—O1 | 1.8 (14) | N4—C10—C11—C7 | −0.9 (12) |
| Cu1—N3—C5—O1 | −179.4 (7) | C8—C7—C11—C10 | 2.9 (12) |
| C6—N3—C5—C4 | −179.5 (9) | C6—C7—C11—C10 | −175.5 (8) |
| Cu1—N3—C5—C4 | −0.7 (10) | Cu1—O2—C12—O3 | −17.2 (15) |
| N1—C4—C5—O1 | 179.2 (8) | Cu1—O2—C12—C13 | 166.2 (7) |
| C3—C4—C5—O1 | −2.8 (15) |
| H··· | ||||
| O1 | 0.84 (3) | 2.13 (5) | 2.908 (9) | 154 (9) |
| O1 | 0.84 (3) | 2.23 (5) | 2.964 (10) | 146 (8) |
| O2 | 0.86 (3) | 2.11 (4) | 2.951 (10) | 165 (10) |
| O2 | 0.85 (3) | 2.20 (3) | 3.033 (8) | 169 (10) |
| C2—H2···O2iii | 0.95 | 2.37 | 2.987 (13) | 123 |
| C8—H8···O3vii | 0.95 | 2.57 | 3.364 (11) | 141 |
| C9—H9···O2 | 0.95 | 2.50 | 3.358 (12) | 151 |