Literature DB >> 25151889

The Anadara trapezia transcriptome: a resource for molluscan physiological genomics.

Peter J Prentis1, Ana Pavasovic2.   

Abstract

In this study we undertook deep sequencing of the blood cockle, Anadara trapezia, transcriptome to generate genomic resources for future functional genomics analyses. Over 27 million high quality paired end reads were assembled into 75024 contigs. Of these contigs, 29013 (38.7%) received significant BLASTx hits and gene ontology (GO) terms were assigned to 13718 of these sequences. This resource will facilitate physiological genomic studies to test the gene expression response of A. trapezia to various environmental stresses.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Arcoida; Genomics; Mollusk; Non-model organism; Physiology; Transcriptome

Mesh：

Substances：

Year:  2014        PMID： 25151889     DOI： 10.1016/j.margen.2014.08.004

Source DB:  PubMed          Journal:  Mar Genomics        ISSN： 1874-7787            Impact factor:   1.710


  12 in total

1.  Transcriptome sequencing and de novo characterization of Korean endemic land snail, Koreanohadra kurodana for functional transcripts and SSR markers.

Authors:  Se Won Kang; Bharat Bhusan Patnaik; Hee-Ju Hwang; So Young Park; Jong Min Chung; Dae Kwon Song; Hongray Howrelia Patnaik; Jae Bong Lee; Changmu Kim; Soonok Kim; Hong Seog Park; Yeon Soo Han; Jun Sang Lee; Yong Seok Lee
Journal:  Mol Genet Genomics       Date:  2016-08-09       Impact factor: 3.291

2.  Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery.

Authors:  Bharat Bhusan Patnaik; Tae Hun Wang; Se Won Kang; Hee-Ju Hwang; So Young Park; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Changmu Kim; Soonok Kim; Jun Sang Lee; Yeon Soo Han; Hong Seog Park; Yong Seok Lee
Journal:  PLoS One       Date:  2016-02-12       Impact factor: 3.240

3.  Analysis of synonymous codon usage patterns in sixty-four different bivalve species.

Authors:  Marco Gerdol; Gianluca De Moro; Paola Venier; Alberto Pallavicini
Journal:  PeerJ       Date:  2015-12-14       Impact factor: 2.984

4.  Insights into the innate immunome of actiniarians using a comparative genomic approach.

Authors:  Chloé A van der Burg; Peter J Prentis; Joachim M Surm; Ana Pavasovic
Journal:  BMC Genomics       Date:  2016-11-02       Impact factor: 3.969

5.  Comparative Analysis and Distribution of Omega-3 lcPUFA Biosynthesis Genes in Marine Molluscs.

Authors:  Joachim M Surm; Peter J Prentis; Ana Pavasovic
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

6.  Transcriptome analysis and characterisation of gill-expressed carbonic anhydrase and other key osmoregulatory genes in freshwater crayfish Cherax quadricarinatus.

Authors:  Muhammad Yousuf Ali; Ana Pavasovic; Peter B Mather; Peter J Prentis
Journal:  Data Brief       Date:  2015-09-02

7.  Transcriptome Analysis of the Sydney Rock Oyster, Saccostrea glomerata: Insights into Molluscan Immunity.

Authors:  Nicole G Ertl; Wayne A O'Connor; Alexie Papanicolaou; Aaron N Wiegand; Abigail Elizur
Journal:  PLoS One       Date:  2016-06-03       Impact factor: 3.240

8.  De novo Transcriptome Generation and Annotation for Two Korean Endemic Land Snails, Aegista chejuensis and Aegista quelpartensis, Using Illumina Paired-End Sequencing Technology.

Authors:  Se Won Kang; Bharat Bhusan Patnaik; Hee-Ju Hwang; So Young Park; Tae Hun Wang; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Hongray Howrelia Patnaik; Jae Bong Lee; Changmu Kim; Soonok Kim; Hong Seog Park; Jun Sang Lee; Yeon Soo Han; Yong Seok Lee
Journal:  Int J Mol Sci       Date:  2016-03-15       Impact factor: 5.923

9.  Transcriptomic Analysis of the Endangered Neritid Species Clithon retropictus: De Novo Assembly, Functional Annotation, and Marker Discovery.

Authors:  So Young Park; Bharat Bhusan Patnaik; Se Won Kang; Hee-Ju Hwang; Jong Min Chung; Dae Kwon Song; Min Kyu Sang; Hongray Howrelia Patnaik; Jae Bong Lee; Mi Young Noh; Changmu Kim; Soonok Kim; Hong Seog Park; Jun Sang Lee; Yeon Soo Han; Yong Seok Lee
Journal:  Genes (Basel)       Date:  2016-07-22       Impact factor: 4.096

10.  Transcriptome of the Australian Mollusc Dicathais orbita Provides Insights into the Biosynthesis of Indoles and Choline Esters.

Authors:  Abdul Baten; Ajit Kumar Ngangbam; Daniel L E Waters; Kirsten Benkendorff
Journal:  Mar Drugs       Date:  2016-07-20       Impact factor: 5.118
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