Literature DB >> 25149438

Labelling Herceptin with a novel oxaliplatin derivative: a computational approach towards the selective drug delivery.

José P Cerón-Carrasco1, Javier Cerezo, Alberto Requena, José Zuñiga, Julia Contreras-García, Sonali Chavan, Miguel Manrubia-Cobo, Horacio Pérez-Sánchez.   

Abstract

The clinical use of platinum(II)-based drugs has serious side effects due to the non-specific reactions with both malignant and normal cells. To circumvent such major drawback, novel metallodrugs might be combined with suitable carrier molecules, as antibodies, to ensure selective attacks on tumours while sparing healthy tissues. In this contribution, we investigate the stability of a novel oxaliplatin derivate drug embedded in Herceptin (trastuzumab), an antibody which is able to recognise breast cancer cells, by using a wide panel of theoretical tools: docking, molecular dynamics and quantum calculations. Our calculations reveal the binding mechanism: the drug initially interacts non-covalently with the Pro40A and Asp167A residues, and the nitrogen of His171B subsequently replaces one of the water molecules coordinated to the platinum center, where the latter step reversibly fixes the drug into the antibody. These data might be used to further rationalise the synthesis of improved drugs beyond classical platinum(II) derivatives by improving the ligand-protein coupling mode.

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Year:  2014        PMID: 25149438     DOI: 10.1007/s00894-014-2401-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  41 in total

1.  NCIPLOT: a program for plotting non-covalent interaction regions.

Authors:  Julia Contreras-García; Erin R Johnson; Shahar Keinan; Robin Chaudret; Jean-Philip Piquemal; David N Beratan; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  Non-traditional platinum compounds for improved accumulation, oral bioavailability, and tumor targeting.

Authors:  Katherine S Lovejoy; Stephen J Lippard
Journal:  Dalton Trans       Date:  2009-10-01       Impact factor: 4.390

4.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

5.  Revealing noncovalent interactions.

Authors:  Erin R Johnson; Shahar Keinan; Paula Mori-Sánchez; Julia Contreras-García; Aron J Cohen; Weitao Yang
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

6.  Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab.

Authors:  Hyun-Soo Cho; Karen Mason; Kasra X Ramyar; Ann Marie Stanley; Sandra B Gabelli; Dan W Denney; Daniel J Leahy
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

7.  Cure of xenografted human carcinomas by BR96-doxorubicin immunoconjugates.

Authors:  P A Trail; D Willner; S J Lasch; A J Henderson; S Hofstead; A M Casazza; R A Firestone; I Hellström; K E Hellström
Journal:  Science       Date:  1993-07-09       Impact factor: 47.728

8.  How strong can the bend be on a DNA helix from cisplatin? DFT and MP2 quantum chemical calculations of cisplatin-bridged DNA purine bases.

Authors:  Jaroslav V Burda; Jerzy Leszczynski
Journal:  Inorg Chem       Date:  2003-11-03       Impact factor: 5.165

Review 9.  The resurgence of platinum-based cancer chemotherapy.

Authors:  Lloyd Kelland
Journal:  Nat Rev Cancer       Date:  2007-07-12       Impact factor: 60.716

10.  High-Throughput parallel blind Virtual Screening using BINDSURF.

Authors:  Irene Sánchez-Linares; Horacio Pérez-Sánchez; José M Cecilia; José M García
Journal:  BMC Bioinformatics       Date:  2012-09-07       Impact factor: 3.169

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  5 in total

1.  Non-covalent carriage of anticancer agents by humanized antibody trastuzumab.

Authors:  Arpita Yadav; Sweta Sharma; Veejendra Kumar Yadav
Journal:  J Mol Model       Date:  2016-04-25       Impact factor: 1.810

2.  Structure based virtual screening of natural product molecules as glycosidase inhibitors.

Authors:  N S Hari Narayana Moorthy; Natércia F Brás; Maria J Ramos; Pedro A Fernandes
Journal:  In Silico Pharmacol       Date:  2021-10-16

3.  Platinum(II) complexes of imidazophenanthroline-based polypyridine ligands as potential anticancer agents: synthesis, characterization, in vitro cytotoxicity studies and a comparative ab initio, and DFT studies with cisplatin, carboplatin, and oxaliplatin.

Authors:  Carlson Alexander; A Nithyakumar; M Wilson Bosco Paul; N Arockia Samy
Journal:  J Biol Inorg Chem       Date:  2018-06-14       Impact factor: 3.358

4.  In Silico Designed Axl Receptor Blocking Drug Candidates Against Zika Virus Infection.

Authors:  Edita Sarukhanyan; Sergey Shityakov; Thomas Dandekar
Journal:  ACS Omega       Date:  2018-05-16

5.  Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2).

Authors:  Mohammad Firoz Khan; Nusrat Nahar; Ridwan Bin Rashid; Akhtaruzzaman Chowdhury; Mohammad A Rashid
Journal:  BMC Complement Altern Med       Date:  2018-02-02       Impact factor: 3.659

  5 in total

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