Literature DB >> 25137633

Riboswitch engineering - making the all-important second and third steps.

Christian Berens1, Beatrix Suess2.   

Abstract

Synthetic biology uses our understanding of biological systems to develop innovative solutions for challenges in fields as diverse as genetic control and logic devices, bioremediation, materials production or diagnostics and therapy in medicine by designing new biological components. RNA-based elements are key components of these engineered systems. Their structural and functional diversity is ideal for generating regulatory riboswitches that react with many different types of output to molecular and environmental signals. Recent advances have added new sensor and output domains to the existing toolbox, and demonstrated the portability of riboswitches to many different organisms. Improvements in riboswitch design and screens for selecting in vivo active switches provide the means to isolate riboswitches with regulatory properties more like their natural counterparts.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25137633     DOI: 10.1016/j.copbio.2014.07.014

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  29 in total

1.  Characterization of Engineered PreQ1 Riboswitches for Inducible Gene Regulation in Mycobacteria.

Authors:  Erik R Van Vlack; Shana Topp; Jessica C Seeliger
Journal:  J Bacteriol       Date:  2017-02-28       Impact factor: 3.490

Review 2.  Recent advances and future trends of riboswitches: attractive regulatory tools.

Authors:  Jean Paul Sinumvayo; Chunhua Zhao; Philibert Tuyishime
Journal:  World J Microbiol Biotechnol       Date:  2018-11-09       Impact factor: 3.312

3.  Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides.

Authors:  Marta Kulik; Takaharu Mori; Yuji Sugita; Joanna Trylska
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

Review 4.  Biosensors and their applications - A review.

Authors:  Parikha Mehrotra
Journal:  J Oral Biol Craniofac Res       Date:  2016-01-06

5.  Aptamer-Based Control of Gene Expression Utilizing Endogenous miRNAs.

Authors:  Jörg S Hartig
Journal:  Mol Ther       Date:  2018-04-19       Impact factor: 11.454

6.  Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Authors:  Amin Espah Borujeni; Dennis M Mishler; Jingzhi Wang; Walker Huso; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2015-11-30       Impact factor: 16.971

7.  Riboswitch-mediated Attenuation of Transgene Cytotoxicity Increases Adeno-associated Virus Vector Yields in HEK-293 Cells.

Authors:  Benjamin Strobel; Benedikt Klauser; Jörg S Hartig; Thorsten Lamla; Florian Gantner; Sebastian Kreuz
Journal:  Mol Ther       Date:  2015-07-03       Impact factor: 11.454

8.  An Archaeal Fluoride-Responsive Riboswitch Provides an Inducible Expression System for Hyperthermophiles.

Authors:  Michael Clayton Speed; Brett W Burkhart; Jonathan W Picking; Thomas J Santangelo
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

Review 9.  Long-Range Interactions in Riboswitch Control of Gene Expression.

Authors:  Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  Annu Rev Biophys       Date:  2017-03-30       Impact factor: 12.981

10.  incaRNAfbinv: a web server for the fragment-based design of RNA sequences.

Authors:  Matan Drory Retwitzer; Vladimir Reinharz; Yann Ponty; Jérôme Waldispühl; Danny Barash
Journal:  Nucleic Acids Res       Date:  2016-05-16       Impact factor: 16.971

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