Literature DB >> 25136767

A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae.

Jan-Hendrik Hehemann1, Alisdair B Boraston2, Mirjam Czjzek3.   

Abstract

Marine algae contribute approximately half of the global primary production. The large amounts of polysaccharides synthesized by these algae are degraded and consumed by microbes that utilize carbohydrate-active enzymes (CAZymes), thus creating one of the largest and most dynamic components of the Earth's carbon cycle. Over the last decade, structural and functional characterizations of marine CAZymes have revealed a diverse set of scaffolds and mechanisms that are used to degrade agars, carrageenan, alginate and ulvan-polysaccharides from red, brown and green seaweeds, respectively. The analysis of these CAZymes is not only expanding our understanding of their functions but is enabling the enhanced annotation of (meta)-genomic data sets, thus promoting an improved understanding of microbes that drive this marine component of the carbon cycle. Furthermore, this information is setting a foundation that will enable marine algae to be harnessed as a novel resource for biorefineries. In this review, we cover the most recent structural and functional analyses of marine CAZymes that are specialized in the digestion of macro-algal polysaccharides.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25136767     DOI: 10.1016/j.sbi.2014.07.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

Review 1.  Alginate lyase: Review of major sources and classification, properties, structure-function analysis and applications.

Authors:  Benwei Zhu; Heng Yin
Journal:  Bioengineered       Date:  2015-04-01       Impact factor: 3.269

2.  Accurate Quantification of Laminarin in Marine Organic Matter with Enzymes from Marine Microbes.

Authors:  Stefan Becker; André Scheffel; Martin F Polz; Jan-Hendrik Hehemann
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

3.  Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation.

Authors:  Ying Sun; Haiwei Luo
Journal:  Appl Environ Microbiol       Date:  2018-05-17       Impact factor: 4.792

Review 4.  Polysaccharide Utilization Loci: Fueling Microbial Communities.

Authors:  Julie M Grondin; Kazune Tamura; Guillaume Déjean; D Wade Abbott; Harry Brumer
Journal:  J Bacteriol       Date:  2017-07-11       Impact factor: 3.490

5.  Pharyngocutaneous fistula caused by dried 'Kombu' (edible seaweed) after total laryngectomy.

Authors:  Yuki Kusaba; Toru Miwa; Momoko Ise; Ryosei Minoda
Journal:  BMJ Case Rep       Date:  2019-02-26

6.  Enteromorpha prolifera Diet Drives Intestinal Microbiome Composition in Siganus oramin.

Authors:  Yan Xu; Jin Li; Xuefeng Han; Zhibiao Zhang; Mingqi Zhong; Zhong Hu
Journal:  Curr Microbiol       Date:  2020-10-09       Impact factor: 2.188

7.  Structural and functional characterization of PL28 family ulvan lyase NLR48 from Nonlabens ulvanivorans.

Authors:  ThirumalaiSelvi Ulaganathan; Ehud Banin; William Helbert; Miroslaw Cygler
Journal:  J Biol Chem       Date:  2018-06-06       Impact factor: 5.157

8.  A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T.

Authors:  Duleepa Pathiraja; Line Christiansen; Byeonghyeok Park; Mikkel Schultz-Johansen; Geul Bang; Peter Stougaard; In-Geol Choi
Journal:  Appl Environ Microbiol       Date:  2021-05-26       Impact factor: 4.792

9.  Structural and molecular basis for the substrate positioning mechanism of a new PL7 subfamily alginate lyase from the arctic.

Authors:  Fei Xu; Xiu-Lan Chen; Xiao-Hui Sun; Fang Dong; Chun-Yang Li; Ping-Yi Li; Haitao Ding; Yin Chen; Yu-Zhong Zhang; Peng Wang
Journal:  J Biol Chem       Date:  2020-09-23       Impact factor: 5.157

10.  A CAZyme-Rich Genome of a Taxonomically Novel Rhodophyte-Associated Carrageenolytic Marine Bacterium.

Authors:  Delbert Almerick T Boncan; Anne Marjorie E David; Arturo O Lluisma
Journal:  Mar Biotechnol (NY)       Date:  2018-06-23       Impact factor: 3.619

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.