Literature DB >> 25131948

Transcript elongation factors: shaping transcriptomes after transcript initiation.

Mieke Van Lijsebettens1, Klaus D Grasser2.   

Abstract

Elongation is a dynamic and highly regulated step of eukaryotic gene transcription. A variety of transcript elongation factors (TEFs), including modulators of RNA polymerase II (RNAPII) activity, histone chaperones, and histone modifiers, have been characterized from plants. These factors control the efficiency of transcript elongation of subsets of genes in the chromatin context and thus contribute to tuning gene expression programs. We review here how genetic and biochemical analyses, primarily in Arabidopsis thaliana, have advanced our understanding of how TEFs adjust plant gene transcription. These studies have revealed that TEFs regulate plant growth and development by modulating diverse processes including hormone signaling, circadian clock, pathogen defense, responses to light, and developmental transitions.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA polymerase II transcription; chromatin; histone; nucleosome; plant development

Mesh:

Substances:

Year:  2014        PMID: 25131948     DOI: 10.1016/j.tplants.2014.07.002

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  26 in total

1.  The many faces of plant chromatin: Meeting summary of the 4th European workshop on plant chromatin 2015, Uppsala, Sweden.

Authors:  Iva Mozgová; Claudia Köhler; Valérie Gaudin; Lars Hennig
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

2.  Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.

Authors:  Maolin Peng; Zepeng Li; Nana Zhou; Mengmeng Ma; Yupei Jiang; Aiwu Dong; Wen-Hui Shen; Lin Li
Journal:  Plant Physiol       Date:  2017-11-29       Impact factor: 8.340

3.  Histone 2B monoubiquitination complex integrates transcript elongation with RNA processing at circadian clock and flowering regulators.

Authors:  Magdalena Woloszynska; Sabine Le Gall; Pia Neyt; Tommaso M Boccardi; Marion Grasser; Gernot Längst; Stijn Aesaert; Griet Coussens; Stijn Dhondt; Eveline Van De Slijke; Leonardo Bruno; Jorge Fung-Uceda; Paloma Mas; Marc Van Montagu; Dirk Inzé; Kristiina Himanen; Geert De Jaeger; Klaus D Grasser; Mieke Van Lijsebettens
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-28       Impact factor: 11.205

4.  The plant RNA polymerase II elongation complex: A hub coordinating transcript elongation and mRNA processing.

Authors:  Marion Grasser; Klaus D Grasser
Journal:  Transcription       Date:  2017-10-04

5.  RIMA-Dependent Nuclear Accumulation of IYO Triggers Auxin-Irreversible Cell Differentiation in Arabidopsis.

Authors:  Alfonso Muñoz; Silvina Mangano; Mary Paz González-García; Ramón Contreras; Michael Sauer; Bert De Rybel; Dolf Weijers; José Juan Sánchez-Serrano; Maite Sanmartín; Enrique Rojo
Journal:  Plant Cell       Date:  2017-02-21       Impact factor: 11.277

6.  The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors.

Authors:  Wojciech Antosz; Alexander Pfab; Hans F Ehrnsberger; Philipp Holzinger; Karin Köllen; Simon A Mortensen; Astrid Bruckmann; Thomas Schubert; Gernot Längst; Joachim Griesenbeck; Veit Schubert; Marion Grasser; Klaus D Grasser
Journal:  Plant Cell       Date:  2017-03-28       Impact factor: 11.277

7.  Molecular Evolution and Local Root Heterogeneous Expression of the Chenopodium quinoa ARF Genes Provide Insights into the Adaptive Domestication of Crops in Complex Environments.

Authors:  Wenjun Sun; Haomiao Yu; Zhaotang Ma; Yuan Yuan; Sijiao Wang; Jun Yan; Xinran Xu; Hui Chen
Journal:  J Mol Evol       Date:  2021-03-23       Impact factor: 2.395

8.  Critical Role of Transcript Cleavage in Arabidopsis RNA Polymerase II Transcriptional Elongation.

Authors:  Wojciech Antosz; Jules Deforges; Kevin Begcy; Astrid Bruckmann; Yves Poirier; Thomas Dresselhaus; Klaus D Grasser
Journal:  Plant Cell       Date:  2020-03-09       Impact factor: 11.277

9.  Targeted Recruitment of the Basal Transcriptional Machinery by LNK Clock Components Controls the Circadian Rhythms of Nascent RNAs in Arabidopsis.

Authors:  Yuan Ma; Sergio Gil; Klaus D Grasser; Paloma Mas
Journal:  Plant Cell       Date:  2018-04-04       Impact factor: 11.277

10.  The Arabidopsis histone chaperone FACT is required for stress-induced expression of anthocyanin biosynthetic genes.

Authors:  Alexander Pfab; Matthias Breindl; Klaus D Grasser
Journal:  Plant Mol Biol       Date:  2018-01-13       Impact factor: 4.076

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