Literature DB >> 25126899

Colorectal cancer detection using targeted serum metabolic profiling.

Jiangjiang Zhu1, Danijel Djukovic, Lingli Deng, Haiwei Gu, Farhan Himmati, E Gabriela Chiorean, Daniel Raftery.   

Abstract

Colorectal cancer (CRC) is one of the most prevalent and deadly cancers in the world. Despite an expanding knowledge of its molecular pathogenesis during the past two decades, robust biomarkers to enable screening, surveillance, and therapy monitoring of CRC are still lacking. In this study, we present a targeted liquid chromatography-tandem mass spectrometry-based metabolic profiling approach for identifying biomarker candidates that could enable highly sensitive and specific CRC detection using human serum samples. In this targeted approach, 158 metabolites from 25 metabolic pathways of potential significance were monitored in 234 serum samples from three groups of patients (66 CRC patients, 76 polyp patients, and 92 healthy controls). Partial least-squares-discriminant analysis (PLS-DA) models were established, which proved to be powerful for distinguishing CRC patients from both healthy controls and polyp patients. Receiver operating characteristic curves generated based on these PLS-DA models showed high sensitivities (0.96 and 0.89, respectively, for differentiating CRC patients from healthy controls or polyp patients), good specificities (0.80 and 0.88), and excellent areas under the curve (0.93 and 0.95). Monte Carlo cross validation was also applied, demonstrating the robust diagnostic power of this metabolic profiling approach.

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Year:  2014        PMID: 25126899     DOI: 10.1021/pr500494u

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  90 in total

1.  Combining NMR and LC/MS Using Backward Variable Elimination: Metabolomics Analysis of Colorectal Cancer, Polyps, and Healthy Controls.

Authors:  Lingli Deng; Haiwei Gu; Jiangjiang Zhu; G A Nagana Gowda; Danijel Djukovic; E Gabriela Chiorean; Daniel Raftery
Journal:  Anal Chem       Date:  2016-08-01       Impact factor: 6.986

2.  Pan-cancer transcriptional signatures predictive of oncogenic mutations reveal that Fbw7 regulates cancer cell oxidative metabolism.

Authors:  Ryan J Davis; Mehmet Gönen; Daciana H Margineantu; Shlomo Handeli; Jherek Swanger; Pia Hoellerbauer; Patrick J Paddison; Haiwei Gu; Daniel Raftery; Jonathan E Grim; David M Hockenbery; Adam A Margolin; Bruce E Clurman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

3.  Human retinal pigment epithelial cells prefer proline as a nutrient and transport metabolic intermediates to the retinal side.

Authors:  Jennifer R Chao; Kaitlen Knight; Abbi L Engel; Connor Jankowski; Yekai Wang; Megan A Manson; Haiwei Gu; Danijel Djukovic; Daniel Raftery; James B Hurley; Jianhai Du
Journal:  J Biol Chem       Date:  2017-06-14       Impact factor: 5.157

4.  Pharmacometabonomic Prediction of Busulfan Clearance in Hematopoetic Cell Transplant Recipients.

Authors:  Sandi L Navarro; Timothy W Randolph; Laura M Shireman; Daniel Raftery; Jeannine S McCune
Journal:  J Proteome Res       Date:  2016-07-20       Impact factor: 4.466

5.  Candidate serum metabolite biomarkers for differentiating gastroesophageal reflux disease, Barrett's esophagus, and high-grade dysplasia/esophageal adenocarcinoma.

Authors:  Matthew F Buas; Haiwei Gu; Danijel Djukovic; Jiangjiang Zhu; Lynn Onstad; Brian J Reid; Daniel Raftery; Thomas L Vaughan
Journal:  Metabolomics       Date:  2017-01-20       Impact factor: 4.290

6.  Serum Tryptophan Metabolite Levels During Sleep in Patients With and Without Irritable Bowel Syndrome (IBS).

Authors:  Margaret M Heitkemper; Claire Jungyoun Han; Monica E Jarrett; Haiwei Gu; Danijel Djukovic; Robert J Shulman; Daniel Raftery; Wendy A Henderson; Kevin C Cain
Journal:  Biol Res Nurs       Date:  2015-07-07       Impact factor: 2.522

7.  Plasma metabolite abundances are associated with urinary enterolactone excretion in healthy participants on controlled diets.

Authors:  Fayth L Miles; Sandi L Navarro; Yvonne Schwarz; Haiwei Gu; Danijel Djukovic; Timothy W Randolph; Ali Shojaie; Mario Kratz; Meredith A J Hullar; Paul D Lampe; Marian L Neuhouser; Daniel Raftery; Johanna W Lampe
Journal:  Food Funct       Date:  2017-09-20       Impact factor: 5.396

8.  Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression.

Authors:  Chen Chen; Lingli Deng; Siwei Wei; G A Nagana Gowda; Haiwei Gu; Elena G Chiorean; Mohammad Abu Zaid; Marietta L Harrison; Joseph F Pekny; Patrick J Loehrer; Dabao Zhang; Min Zhang; Daniel Raftery
Journal:  J Proteome Res       Date:  2015-05-13       Impact factor: 4.466

9.  Metabolic phenotyping to monitor chronic enteritis canceration.

Authors:  Fan Zhang; Chunbo Li; Kui Deng; Zhuozhong Wang; Weiwei Zhao; Kai Yang; Chunyan Yang; Zhiwei Rong; Lei Cao; Yaxin Lu; Yue Huang; Peng Han; Kang Li
Journal:  Metabolomics       Date:  2020-02-24       Impact factor: 4.290

10.  Globally Optimized Targeted Mass Spectrometry: Reliable Metabolomics Analysis with Broad Coverage.

Authors:  Haiwei Gu; Ping Zhang; Jiangjiang Zhu; Daniel Raftery
Journal:  Anal Chem       Date:  2015-12-02       Impact factor: 6.986

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