Literature DB >> 25123716

Big data in medicine is driving big changes.

F Martin-Sanchez1, K Verspoor.   

Abstract

OBJECTIVES: To summarise current research that takes advantage of "Big Data" in health and biomedical informatics applications.
METHODS: Survey of trends in this work, and exploration of literature describing how large-scale structured and unstructured data sources are being used to support applications from clinical decision making and health policy, to drug design and pharmacovigilance, and further to systems biology and genetics.
RESULTS: The survey highlights ongoing development of powerful new methods for turning that large-scale, and often complex, data into information that provides new insights into human health, in a range of different areas. Consideration of this body of work identifies several important paradigm shifts that are facilitated by Big Data resources and methods: in clinical and translational research, from hypothesis-driven research to data-driven research, and in medicine, from evidence-based practice to practice-based evidence.
CONCLUSIONS: The increasing scale and availability of large quantities of health data require strategies for data management, data linkage, and data integration beyond the limits of many existing information systems, and substantial effort is underway to meet those needs. As our ability to make sense of that data improves, the value of the data will continue to increase. Health systems, genetics and genomics, population and public health; all areas of biomedicine stand to benefit from Big Data and the associated technologies.

Entities:  

Keywords:  Medical informatics; data mining; information storage and retrieval; information systems; text mining

Mesh:

Year:  2014        PMID: 25123716      PMCID: PMC4287083          DOI: 10.15265/IY-2014-0020

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  69 in total

1.  Big data meets the electronic medical record: a commentary on "identifying patients at increased risk for unplanned readmission".

Authors:  Greg de Lissovoy
Journal:  Med Care       Date:  2013-09       Impact factor: 2.983

2.  Biological network extraction from scientific literature: state of the art and challenges.

Authors:  Chen Li; Maria Liakata; Dietrich Rebholz-Schuhmann
Journal:  Brief Bioinform       Date:  2013-02-22       Impact factor: 11.622

3.  Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records.

Authors:  Svetlana Lyalina; Bethany Percha; Paea LePendu; Srinivasan V Iyer; Russ B Altman; Nigam H Shah
Journal:  J Am Med Inform Assoc       Date:  2013-08-16       Impact factor: 4.497

4.  Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.

Authors:  Jyotishman Pathak; Kent R Bailey; Calvin E Beebe; Steven Bethard; David C Carrell; Pei J Chen; Dmitriy Dligach; Cory M Endle; Lacey A Hart; Peter J Haug; Stanley M Huff; Vinod C Kaggal; Dingcheng Li; Hongfang Liu; Kyle Marchant; James Masanz; Timothy Miller; Thomas A Oniki; Martha Palmer; Kevin J Peterson; Susan Rea; Guergana K Savova; Craig R Stancl; Sunghwan Sohn; Harold R Solbrig; Dale B Suesse; Cui Tao; David P Taylor; Les Westberg; Stephen Wu; Ning Zhuo; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2013-11-04       Impact factor: 4.497

5.  Nursing critical patient severity classification system predicts outcomes in patients admitted to surgical intensive care units: use of data from clinical data repository.

Authors:  Mona Choi; JuHee Lee; Mi Jung Ahn; YoungAh Kim
Journal:  Stud Health Technol Inform       Date:  2013

Review 6.  Uncovering text mining: a survey of current work on web-based epidemic intelligence.

Authors:  Nigel Collier
Journal:  Glob Public Health       Date:  2012-07-11

7.  Using prior information from the medical literature in GWAS of oral cancer identifies novel susceptibility variant on chromosome 4--the AdAPT method.

Authors:  Mattias Johansson; Angus Roberts; Dan Chen; Yaoyong Li; Manon Delahaye-Sourdeix; Niraj Aswani; Mark A Greenwood; Simone Benhamou; Pagona Lagiou; Ivana Holcátová; Lorenzo Richiardi; Kristina Kjaerheim; Antonio Agudo; Xavier Castellsagué; Tatiana V Macfarlane; Luigi Barzan; Cristina Canova; Nalin S Thakker; David I Conway; Ariana Znaor; Claire M Healy; Wolfgang Ahrens; David Zaridze; Neonilia Szeszenia-Dabrowska; Jolanta Lissowska; Eleonóra Fabiánová; Ioan Nicolae Mates; Vladimir Bencko; Lenka Foretova; Vladimir Janout; Maria Paula Curado; Sergio Koifman; Ana Menezes; Victor Wünsch-Filho; Jose Eluf-Neto; Paolo Boffetta; Silvia Franceschi; Rolando Herrero; Leticia Fernandez Garrote; Renato Talamini; Stefania Boccia; Pilar Galan; Lars Vatten; Peter Thomson; Diana Zelenika; Mark Lathrop; Graham Byrnes; Hamish Cunningham; Paul Brennan; Jon Wakefield; James D McKay
Journal:  PLoS One       Date:  2012-05-25       Impact factor: 3.240

8.  Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data.

Authors:  Uma S Mudunuri; Mohamad Khouja; Stephen Repetski; Girish Venkataraman; Anney Che; Brian T Luke; F Pascal Girard; Robert M Stephens
Journal:  PLoS One       Date:  2013-12-02       Impact factor: 3.240

Review 9.  Scoping review on search queries and social media for disease surveillance: a chronology of innovation.

Authors:  Theresa Marie Bernardo; Andrijana Rajic; Ian Young; Katie Robiadek; Mai T Pham; Julie A Funk
Journal:  J Med Internet Res       Date:  2013-07-18       Impact factor: 5.428

10.  Automated extraction of clinical traits of multiple sclerosis in electronic medical records.

Authors:  Mary F Davis; Subramaniam Sriram; William S Bush; Joshua C Denny; Jonathan L Haines
Journal:  J Am Med Inform Assoc       Date:  2013-10-22       Impact factor: 4.497

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  33 in total

1.  Nine Principles of Semantic Harmonization.

Authors:  James A Cunningham; Michel Van Speybroeck; Dipak Kalra; Rudi Verbeeck
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

Review 2.  Precision diagnosis: a view of the clinical decision support systems (CDSS) landscape through the lens of critical care.

Authors:  Arnaud Belard; Timothy Buchman; Jonathan Forsberg; Benjamin K Potter; Christopher J Dente; Allan Kirk; Eric Elster
Journal:  J Clin Monit Comput       Date:  2016-02-22       Impact factor: 2.502

3.  Contextual Embeddings from Clinical Notes Improves Prediction of Sepsis.

Authors:  Fatemeh Amrollahi; Supreeth P Shashikumar; Fereshteh Razmi; Shamim Nemati
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

4.  Development of the Initial Surveys for the All of Us Research Program.

Authors:  Robert M Cronin; Rebecca N Jerome; Brandy Mapes; Regina Andrade; Rebecca Johnston; Jennifer Ayala; David Schlundt; Kemberlee Bonnet; Sunil Kripalani; Kathryn Goggins; Kenneth A Wallston; Mick P Couper; Michael R Elliott; Paul Harris; Mark Begale; Fatima Munoz; Maria Lopez-Class; David Cella; David Condon; Mona AuYoung; Kathleen M Mazor; Steve Mikita; Michael Manganiello; Nicholas Borselli; Stephanie Fowler; Joni L Rutter; Joshua C Denny; Elizabeth W Karlson; Brian K Ahmedani; Christopher J O'Donnell
Journal:  Epidemiology       Date:  2019-07       Impact factor: 4.822

Review 5.  Big data - smart health strategies. Findings from the yearbook 2014 special theme.

Authors:  V Koutkias; F Thiessard
Journal:  Yearb Med Inform       Date:  2014-08-15

6.  From Big Data to Smart Data for Pharmacovigilance: The Role of Healthcare Databases and Other Emerging Sources.

Authors:  Gianluca Trifirò; Janet Sultana; Andrew Bate
Journal:  Drug Saf       Date:  2018-02       Impact factor: 5.606

7.  Challenges and Barriers in Applying Natural Language Processing to Medical Examiner Notes from Fatal Opioid Poisoning Cases.

Authors:  Daniel R Harris; Christian Eisinger; Yanning Wang; Chris Delcher
Journal:  Proc IEEE Int Conf Big Data       Date:  2020-12

8.  Poor record linkage sensitivity biased outcomes in a linked cohort analysis.

Authors:  Cecilia L Moore; Heather F Gidding; Matthew G Law; Janaki Amin
Journal:  J Clin Epidemiol       Date:  2016-02-02       Impact factor: 6.437

Review 9.  Technological progress in electronic health record system optimization: Systematic review of systematic literature reviews.

Authors:  Elsa Negro-Calduch; Natasha Azzopardi-Muscat; Ramesh S Krishnamurthy; David Novillo-Ortiz
Journal:  Int J Med Inform       Date:  2021-05-21       Impact factor: 4.046

10.  Artificial intelligence-assisted clinical decision support for childhood asthma management: A randomized clinical trial.

Authors:  Hee Yun Seol; Pragya Shrestha; Joy Fladager Muth; Chung-Il Wi; Sunghwan Sohn; Euijung Ryu; Miguel Park; Kathy Ihrke; Sungrim Moon; Katherine King; Philip Wheeler; Bijan Borah; James Moriarty; Jordan Rosedahl; Hongfang Liu; Deborah B McWilliams; Young J Juhn
Journal:  PLoS One       Date:  2021-08-02       Impact factor: 3.240

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