Literature DB >> 25110472

Current technologies to identify protein kinase substrates in high throughput.

Liang Xue1, W Andy Tao2.   

Abstract

Since the discovery of protein phosphorylation as an important modulator of many cellular processes, the involvement of protein kinases in diseases, such as cancer, diabetes, cardiovascular diseases, and central nervous system pathologies, has been extensively documented. Our understanding of many disease pathologies at the molecular level, therefore, requires the comprehensive identification of substrates targeted by protein kinases. In this review, we focus on recent techniques for kinase substrate identification in high throughput, in particular on genetic and proteomic approaches. Each method with its inherent advantages and limitations is discussed.

Entities:  

Keywords:  high throughput screening; in vitro kinase assay; kinase substrate; mass spectrometry; phosphoproteomics; phosphorylation

Year:  2013        PMID: 25110472      PMCID: PMC4126243          DOI: 10.1007/s11515-013-1257-z

Source DB:  PubMed          Journal:  Front Biol (Beijing)        ISSN: 1674-7984


  77 in total

1.  Identification of new JNK substrate using ATP pocket mutant JNK and a corresponding ATP analogue.

Authors:  H Habelhah; K Shah; L Huang; A L Burlingame; K M Shokat; Z Ronai
Journal:  J Biol Chem       Date:  2001-03-19       Impact factor: 5.157

Review 2.  Oncogenic kinase signalling.

Authors:  P Blume-Jensen; T Hunter
Journal:  Nature       Date:  2001-05-17       Impact factor: 49.962

Review 3.  Protein kinases--the major drug targets of the twenty-first century?

Authors:  Philip Cohen
Journal:  Nat Rev Drug Discov       Date:  2002-04       Impact factor: 84.694

4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

Review 5.  Quantitative phosphoproteomics strategies for understanding protein kinase-mediated signal transduction pathways.

Authors:  Hidetaka Kosako; Kohji Nagano
Journal:  Expert Rev Proteomics       Date:  2011-02       Impact factor: 3.940

Review 6.  Pheromone signalling and polarized morphogenesis in yeast.

Authors:  E Leberer; D Y Thomas; M Whiteway
Journal:  Curr Opin Genet Dev       Date:  1997-02       Impact factor: 5.578

7.  Kinase peptide specificity: improved determination and relevance to protein phosphorylation.

Authors:  Koichi Fujii; Guozhi Zhu; Yin Liu; John Hallam; Lin Chen; Juan Herrero; Stephen Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-08       Impact factor: 11.205

Review 8.  KESTREL: a powerful method for identifying the physiological substrates of protein kinases.

Authors:  Philip Cohen; Axel Knebel
Journal:  Biochem J       Date:  2006-01-01       Impact factor: 3.857

9.  A proteomic approach for comprehensively screening substrates of protein kinases such as Rho-kinase.

Authors:  Mutsuki Amano; Yuta Tsumura; Kentaro Taki; Hidenori Harada; Kazutaka Mori; Tomoki Nishioka; Katsuhiro Kato; Takeshi Suzuki; Yosuke Nishioka; Akihiro Iwamatsu; Kozo Kaibuchi
Journal:  PLoS One       Date:  2010-01-14       Impact factor: 3.240

10.  Functional organization of the S. cerevisiae phosphorylation network.

Authors:  Dorothea Fiedler; Hannes Braberg; Monika Mehta; Gal Chechik; Gerard Cagney; Paromita Mukherjee; Andrea C Silva; Michael Shales; Sean R Collins; Sake van Wageningen; Patrick Kemmeren; Frank C P Holstege; Jonathan S Weissman; Michael-Christopher Keogh; Daphne Koller; Kevan M Shokat; Nevan J Krogan
Journal:  Cell       Date:  2009-03-06       Impact factor: 41.582

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  6 in total

1.  K-CLASP: A Tool to Identify Phosphosite Specific Kinases and Interacting Proteins.

Authors:  Pavithra M Dedigama-Arachchige; Mary Kay H Pflum
Journal:  ACS Chem Biol       Date:  2016-10-17       Impact factor: 5.100

Review 2.  Phosphoproteomic Approaches to Discover Novel Substrates of Mycobacterial Ser/Thr Protein Kinases.

Authors:  Seanantha S Baros; Jonathan M Blackburn; Nelson C Soares
Journal:  Mol Cell Proteomics       Date:  2019-12-15       Impact factor: 5.911

Review 3.  Phospho-regulation of mitotic spindle assembly.

Authors:  Joseph Y Ong; Michelle C Bradley; Jorge Z Torres
Journal:  Cytoskeleton (Hoboken)       Date:  2020-12-16

4.  System-wide identification and prioritization of enzyme substrates by thermal analysis.

Authors:  Amir Ata Saei; Christian M Beusch; Pierre Sabatier; Juan Astorga Wells; Hassan Gharibi; Zhaowei Meng; Alexey Chernobrovkin; Sergey Rodin; Katja Näreoja; Ann-Gerd Thorsell; Tobias Karlberg; Qing Cheng; Susanna L Lundström; Massimiliano Gaetani; Ákos Végvári; Elias S J Arnér; Herwig Schüler; Roman A Zubarev
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

Review 5.  From the research laboratory to the database: the Caenorhabditis elegans kinome in UniProtKB.

Authors:  Rossana Zaru; Michele Magrane; Claire O'Donovan
Journal:  Biochem J       Date:  2017-02-15       Impact factor: 3.857

Review 6.  AMPK: An Epigenetic Landscape Modulator.

Authors:  Brendan Gongol; Indah Sari; Tiffany Bryant; Geraldine Rosete; Traci Marin
Journal:  Int J Mol Sci       Date:  2018-10-19       Impact factor: 5.923

  6 in total

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