Literature DB >> 25110020

Emerging functions of alternative splicing coupled with nonsense-mediated decay.

Fursham M Hamid1, Eugene V Makeyev.   

Abstract

Higher eukaryotes rely on AS (alternative splicing) of pre-mRNAs (mRNA precursors) to generate more than one protein product from a single gene and to regulate mRNA stability and translational activity. An important example of the latter function involves an interplay between AS and NMD (nonsense-mediated decay), a cytoplasmic quality control mechanism eliminating mRNAs containing PTCs (premature translation termination codons). Although originally identified as an error surveillance process, AS-NMD additionally provides an efficient strategy for deterministic regulation of gene expression outputs. In this review, we discuss recently published examples of AS-NMD and delineate functional contexts where recurrent use of this mechanism orchestrates expression of important genes.

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Year:  2014        PMID: 25110020     DOI: 10.1042/BST20140066

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  30 in total

1.  Evolutionarily conserved exon definition interactions with U11 snRNP mediate alternative splicing regulation on U11-48K and U11/U12-65K genes.

Authors:  Elina H Niemelä; Jens Verbeeren; Prosanta Singha; Visa Nurmi; Mikko J Frilander
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 2.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

3.  Functional analysis of rare variants in mismatch repair proteins augments results from computation-based predictive methods.

Authors:  Sanjeevani Arora; Peter J Huwe; Rahmat Sikder; Manali Shah; Amanda J Browne; Randy Lesh; Emmanuelle Nicolas; Sanat Deshpande; Michael J Hall; Roland L Dunbrack; Erica A Golemis
Journal:  Cancer Biol Ther       Date:  2017-05-11       Impact factor: 4.742

4.  Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Authors:  Dinanath Sulakhe; Mark D'Souza; Sheng Wang; Sandhya Balasubramanian; Prashanth Athri; Bingqing Xie; Stefan Canzar; Gady Agam; T Conrad Gilliam; Natalia Maltsev
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

5.  Novel alternatively spliced isoforms of MEF2A and their mRNA expression patterns in pigs.

Authors:  Xiao Hong Guo; Qi Zhang; Meng Li; Peng Fei Gao; Guo Qing Cao; Zhi Min Cheng; Ning Fang Zhang; Bao Yu Le; Jian Feng Liu; Xiao Jun Liu; Bu Gao Li
Journal:  J Genet       Date:  2018-09       Impact factor: 1.166

6.  Nonsense-mediated RNA decay--a switch and dial for regulating gene expression.

Authors:  Jenna E Smith; Kristian E Baker
Journal:  Bioessays       Date:  2015-03-27       Impact factor: 4.345

Review 7.  The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.

Authors:  Guramrit Singh; Gabriel Pratt; Gene W Yeo; Melissa J Moore
Journal:  Annu Rev Biochem       Date:  2015-03-11       Impact factor: 23.643

8.  Regulation of gene expression by translation factor eIF5A: Hypusine-modified eIF5A enhances nonsense-mediated mRNA decay in human cells.

Authors:  Mainul Hoque; Ji Yeon Park; Yun-Juan Chang; Augusto D Luchessi; Tavane D Cambiaghi; Raghavendra Shamanna; Hartmut M Hanauske-Abel; Bart Holland; Tsafi Pe'ery; Bin Tian; Michael B Mathews
Journal:  Translation (Austin)       Date:  2017-08-14

9.  Functional Annotation of Custom Transcriptomes.

Authors:  Fursham Hamid; Kaur Alasoo; Jaak Vilo; Eugene Makeyev
Journal:  Methods Mol Biol       Date:  2022

10.  The identification of additional zebrafish DICP genes reveals haplotype variation and linkage to MHC class I genes.

Authors:  Ivan Rodriguez-Nunez; Dustin J Wcisel; Ronda T Litman; Gary W Litman; Jeffrey A Yoder
Journal:  Immunogenetics       Date:  2016-01-22       Impact factor: 2.846

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