Literature DB >> 25109293

A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification.

Konstantin B Ignatov1, Ekaterina V Barsova2, Arkady F Fradkov2, Konstantin A Blagodatskikh3, Tatiana V Kramarova4, Vladimir M Kramarov1.   

Abstract

The sensitivity and robustness of various DNA detection and amplification techniques are to a large extent determined by the properties of the DNA polymerase used. We have compared the performance of conventional Taq and Bst DNA polymerases to a novel Taq DNA polymerase mutant (SD DNA polymerase), which has a strong strand displacement activity, in PCR (including amplification of GC-rich and complex secondary structure templates), long-range PCR (LR PCR), loop-mediated amplification (LAMP), and polymerase chain displacement reaction (PCDR). Our results demonstrate that the strand displacement activity of SD DNA polymerase, in combination with the robust polymerase activity, provides a notable improvement in the sensitivity and efficiency of all these methods.

Keywords:  DNA polymerase; LAMP; PCDR; PCR; isothermal amplification; quantitative amplification; real-time amplification; strand displacement

Mesh:

Substances:

Year:  2014        PMID: 25109293     DOI: 10.2144/000114198

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  14 in total

1.  Isothermal Detection of Mycoplasma pneumoniae Directly from Respiratory Clinical Specimens.

Authors:  Brianna L Petrone; Bernard J Wolff; Alexandra A DeLaney; Maureen H Diaz; Jonas M Winchell
Journal:  J Clin Microbiol       Date:  2015-07-15       Impact factor: 5.948

2.  Construction, Expression, and Characterization of Recombinant Pfu DNA Polymerase in Escherichia coli.

Authors:  Wenjun Zheng; Qingsong Wang; Qun Bi
Journal:  Protein J       Date:  2016-04       Impact factor: 2.371

Review 3.  Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications.

Authors:  Keith J M Moore; Jeremy Cahill; Guy Aidelberg; Rachel Aronoff; Ali Bektaş; Daniela Bezdan; Daniel J Butler; Sridar V Chittur; Martin Codyre; Fernan Federici; Nathan A Tanner; Scott W Tighe; Randy True; Sarah B Ware; Anne L Wyllie; Evan E Afshin; Andres Bendesky; Connie B Chang; Richard Dela Rosa; Eran Elhaik; David Erickson; Andrew S Goldsborough; George Grills; Kathrin Hadasch; Andrew Hayden; Seong-Young Her; Julie A Karl; Chang Hee Kim; Alison J Kriegel; Thomas Kunstman; Zeph Landau; Kevin Land; Bradley W Langhorst; Ariel B Lindner; Benjamin E Mayer; Lee A McLaughlin; Matthew T McLaughlin; Jenny Molloy; Christopher Mozsary; Jerry L Nadler; Melinee D'Silva; David Ng; David H O'Connor; Jerry E Ongerth; Olayinka Osuolale; Ana Pinharanda; Dennis Plenker; Ravi Ranjan; Michael Rosbash; Assaf Rotem; Jacob Segarra; Stephan Schürer; Scott Sherrill-Mix; Helena Solo-Gabriele; Shaina To; Merly C Vogt; Albert D Yu; Christopher E Mason
Journal:  J Biomol Tech       Date:  2021-09

4.  T-ARMS PCR genotyping of SNP rs445709131 using thermostable strand displacement polymerase.

Authors:  Rafeeque R Alyethodi; Umesh Singh; Sushil Kumar; Rani Alex; Rajib Deb; Gyanendra S Sengar; T V Raja; B Prakash
Journal:  BMC Res Notes       Date:  2018-02-15

5.  Identification of a novel bovine copiparvovirus in pooled fetal bovine serum.

Authors:  Sally A Baylis; Csaba Miskey; Johannes Blümel; Marco Kaiser; Beatrix Kapusinszky; Eric Delwart
Journal:  Virus Genes       Date:  2020-04-18       Impact factor: 2.332

6.  Fragmentation Through Polymerization (FTP): A new method to fragment DNA for next-generation sequencing.

Authors:  Konstantin B Ignatov; Konstantin A Blagodatskikh; Dmitry S Shcherbo; Tatiana V Kramarova; Yulia A Monakhova; Vladimir M Kramarov
Journal:  PLoS One       Date:  2019-04-01       Impact factor: 3.240

7.  Single-cell sequencing of the small and AT-skewed genome of malaria parasites.

Authors:  Shiwei Liu; Adam C Huckaby; Audrey C Brown; Christopher C Moore; Ian Burbulis; Michael J McConnell; Jennifer L Güler
Journal:  Genome Med       Date:  2021-05-04       Impact factor: 11.117

8.  Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.

Authors:  Konstantin A Blagodatskikh; Vladimir M Kramarov; Ekaterina V Barsova; Alexey V Garkovenko; Dmitriy S Shcherbo; Andrew A Shelenkov; Vera V Ustinova; Maria R Tokarenko; Simon C Baker; Tatiana V Kramarova; Konstantin B Ignatov
Journal:  PLoS One       Date:  2017-09-11       Impact factor: 3.240

9.  A high-throughput assay for quantitative measurement of PCR errors.

Authors:  Dmitriy A Shagin; Irina A Shagina; Andrew R Zaretsky; Ekaterina V Barsova; Ilya V Kelmanson; Sergey Lukyanov; Dmitriy M Chudakov; Mikhail Shugay
Journal:  Sci Rep       Date:  2017-06-02       Impact factor: 4.379

10.  Specific and rapid identification of the Pheretima aspergillum by loop-mediated isothermal amplification.

Authors:  Qing Huang; Zhiwu Li; Zhiguo Ma; He Li; Runqian Mao
Journal:  Biosci Rep       Date:  2019-02-22       Impact factor: 3.840

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