| Literature DB >> 25108194 |
Elchanan Mossel1, Mike Steel2.
Abstract
Inferring the ancestral state at the root of a phylogenetic tree from states observed at the leaves is a problem arising in evolutionary biology. The simplest technique - majority rule - estimates the root state by the most frequently occurring state at the leaves. Alternative methods - such as maximum parsimony - explicitly take the tree structure into account. Since either method can outperform the other on particular trees, it is useful to consider the accuracy of the methods on trees generated under some evolutionary null model, such as a Yule pure-birth model. In this short note, we answer a recently posed question concerning the performance of majority rule on Yule trees under a symmetric 2-state Markovian substitution model of character state change. We show that majority rule is accurate precisely when the ratio of the birth (speciation) rate of the Yule process to the substitution rate exceeds the value 4. By contrast, maximum parsimony has been shown to be accurate only when this ratio is at least 6. Our proof relies on a second moment calculation, coupling, and a novel application of a reflection principle.Keywords: Ancestral state; Information loss; Markov process; Yule pure-birth tree
Mesh:
Year: 2014 PMID: 25108194 DOI: 10.1016/j.jtbi.2014.07.029
Source DB: PubMed Journal: J Theor Biol ISSN: 0022-5193 Impact factor: 2.691