| Literature DB >> 25107550 |
Joanna Waligórska-Stachura1, Mirosław Andrusiewicz, Nadia Sawicka-Gutaj, Marta Kubiczak, Anna Jankowska, Włodzimierz Liebert, Agata Czarnywojtek, Ryszard Waśko, Al Ricardo Blanco-Gangoo, Marek Ruchała.
Abstract
PURPOSE: Survivin is an apoptosis inhibitor, expressed in almost all types of human malignancies, but rarely in differentiated normal tissues. Recently, survivin gene splice variants with different anti-apoptotic activities have been reported. The current study was undertaken to examine the expression of survivin and its splice variants ∆Ex3 and 2β in pituitary tumors, and to correlate the amount of particular transcripts with clinical staging in pituitary adenomas. Quantitative detection of survivin and its splice variants ∆Ex3 and 2β transcripts in non-cancerous pituitary tissues (n = 12) and different types of pituitary tumor (n = 50).Entities:
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Year: 2015 PMID: 25107550 PMCID: PMC4424271 DOI: 10.1007/s11102-014-0590-9
Source DB: PubMed Journal: Pituitary ISSN: 1386-341X Impact factor: 4.107
Primers and the TaqMan hydrolysis probes used in this study
| Gene | TaqMan probe No | Forward primer 5′ → 3′ | Reverse primer 5′ → 3′ | Amplicon |
|---|---|---|---|---|
| Total BIRC5 | #36 (Cat. No. 04687949001) | gcccagtgtttcttctgctt | aaccggacgaatgcttttta | 88 bp |
| BIRC5-ΔEx3 | #36 (Cat. No. 04687949001) | cagtgtttcttctgcttcaagg | cttattgttggtttcctttgcat | 77 bp |
| BIRC5-2B | #36 (Cat. No. 04687949001) | tctgcttcaaggagctgga | aaagtgctggtattacaggcgta | 88 bp |
| HPRT | Human HPRT Gene Assay, Cat. No. 05 046 157 001 (Roche Diagnostics) | |||
qPCR reaction mixture compounds
| Component | Final concentration |
|---|---|
| cDNA | 5 μl |
| Forward and reverse primer’s mix | 0.5 pmol/μl |
| TaqMan hydrolisis probe | 0.1 μM |
| LightCycler FastStart TaqMan Reaction Mix | 1× |
| PCR grade water | To 20 μl |
qPCR thermal profile
| Cycles | Analysis mode | Target temperature, hold time | Acqusition mode | |
|---|---|---|---|---|
| 1 | Pre-incubation | 95 °C, 10 min | None | |
| 45 | Quantification | Denaturation | 95 °C, 10 s | None |
| annealing, extension | 60 °C, 20 s | None | ||
| Fluorescence data acquisition | 72 °C, 1 s | Single | ||
| 1 | Cooling | 40 °C, 30 s | None | |
Fig. 1Comparisons of survivin expression in pituitary tumors, in healthy controls and in thyroid cancers. Central box represents the values from the lower to upper quartile (25th to 75th percentile). The middle line represents the median. The thin vertical lines extending up or down from the boxes to horizontal lines (so-called whiskers) extend to a multiple of 1.5× the distance of the upper and lower quartile, respectively. Outliers are any values beyond the whiskers
Fig. 2Comparisons of survivin ∆Ex3 expression in pituitary tumors, in healthy controls and in thyroid cancers. Central box represents the values from the lower to upper quartile (25th to 75th percentile). The middle line represents the median. The thin vertical lines extending up or down from the boxes to horizontal lines (so-called whiskers) extend to a multiple of 1.5× the distance of the upper and lower quartile, respectively. Outliers are any values beyond the whiskers
Fig. 3Comparisons of survivin 2β expression in pituitary tumors, in healthy controls and in thyroid cancers. Central box represents the values from the lower to upper quartile (25th to 75th percentile). The middle line represents the median. The thin vertical lines extending up or down from the boxes to horizontal lines (so-called whiskers) extend to a multiple of 1.5× the distance of the upper and lower quartile, respectively. Outliers are any values beyond the whiskers
Fig. 4Comparison of survivin expression in invasive and non-invasive pituitary tumors. Central box represents the values from the lower to upper quartile (25th to 75th percentile). The middle line represents the median. The thin vertical lines extending up or down from the boxes to horizontal lines (so-called whiskers) extend to a multiple of 1.5× the distance of the upper and lower quartile, respectively. Outliers are any values beyond the whiskers
Fig. 5Comparison of survivin ∆Ex3 expression in invasive and non-invasive pituitary tumors. Outliers are shown as dots
Fig. 6Comparison of survivin 2β expression in invasive and non-invasive pituitary tumors. Central box represents the values from the lower to upper quartile (25th to 75th percentile). The middle line represents the median. The thin vertical lines extending up or down from the boxes to horizontal lines (so-called whiskers) extend to a multiple of 1.5× the distance of the upper and lower quartile, respectively. Outliers are any values beyond the whiskers