Literature DB >> 25104868

Characterisation of nine new polymorphic microsatellite loci in the reticulated glass frog Hyalinobatrachium valerioi (Centrolenidae).

Eva Ringler1, Alexandra Mangold2, Katharina Trenkwalder2, Max Ringler3, Walter Hödl2.   

Abstract

Here we document the development of thirteen novel microsatellite markers for the reticulated glass frog Hyalinobatrachium valerioi (Centrolenidae). Nine of those markers were polymorphic and contained between 4 and 34 alleles per locus (mean = 20.3) in 138 individuals (91 males, 47 females) from the field site 'La Gamba', Costa Rica. Average observed heterozygosity was 0.76. Two loci (Hyval19 and Hyval21) significantly deviated from Hardy-Weinberg equilibrium. We did not find evidence for linkage disequilibrium among any of the loci. These markers will serve to identify the genetic mating system in H. valerioi, investigate gene flow between local populations, and reconstruct parent-offspring relationships for studies on individual mating and reproductive success. Therefore, these markers will serve to answer a wide range of scientific questions in conservation, behavioural ecology, and also evolutionary biology.

Entities:  

Keywords:  Costa Rica; Hyalinobatrachium valerioi; microsatellite markers; population genetics

Year:  2014        PMID: 25104868      PMCID: PMC4122515          DOI: 10.1163/15685381-00002940

Source DB:  PubMed          Journal:  Amphib Reptil        ISSN: 0173-5373            Impact factor:   1.839


  6 in total

1.  Ecology: Bleak future for amphibians.

Authors:  Ross A Alford
Journal:  Nature       Date:  2011-12-21       Impact factor: 49.962

2.  Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment.

Authors:  Steven T Kalinowski; Mark L Taper; Tristan C Marshall
Journal:  Mol Ecol       Date:  2007-03       Impact factor: 6.185

3.  TANDEM: integrating automated allele binning into genetics and genomics workflows.

Authors:  Michael Matschiner; Walter Salzburger
Journal:  Bioinformatics       Date:  2009-05-06       Impact factor: 6.937

4.  QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

Authors:  Emese Meglécz; Caroline Costedoat; Vincent Dubut; André Gilles; Thibaut Malausa; Nicolas Pech; Jean-François Martin
Journal:  Bioinformatics       Date:  2009-12-10       Impact factor: 6.937

5.  High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries.

Authors:  Thibaut Malausa; André Gilles; Emese Meglécz; Hélène Blanquart; Stéphanie Duthoy; Caroline Costedoat; Vincent Dubut; Nicolas Pech; Philippe Castagnone-Sereno; Christophe Délye; Nicolas Feau; Pascal Frey; Philippe Gauthier; Thomas Guillemaud; Laurent Hazard; Valérie Le Corre; Brigitte Lung-Escarmant; Pierre-Jean G Malé; Stéphanie Ferreira; Jean-François Martin
Journal:  Mol Ecol Resour       Date:  2011-02-21       Impact factor: 7.090

6.  Microsatellite analysis of population structure in Canadian polar bears.

Authors:  D Paetkau; W Calvert; I Stirling; C Strobeck
Journal:  Mol Ecol       Date:  1995-06       Impact factor: 6.185

  6 in total
  1 in total

1.  Low reproductive skew despite high male-biased operational sex ratio in a glass frog with paternal care.

Authors:  Alexandra Mangold; Katharina Trenkwalder; Max Ringler; Walter Hödl; Eva Ringler
Journal:  BMC Evol Biol       Date:  2015-09-03       Impact factor: 3.260

  1 in total

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