| Literature DB >> 25101008 |
Olesya Ajnakina1, Susana Borges2, Marta Di Forti1, Yogen Patel3, Xiaohui Xu4, Priscilla Green3, Simona A Stilo1, Anna Kolliakou1, Poonam Sood1, Tiago Reis Marques1, Anthony S David1, Diana Prata1, Paola Dazzan1, John Powell3, Carmine Pariante5, Valeria Mondelli5, Craig Morgan2, Robin M Murray1, Helen L Fisher4, Conrad Iyegbe6.
Abstract
BACKGROUND: Failure to account for the etiological diversity that typically occurs in psychiatric cohorts may increase the potential for confounding as a proportion of genetic variance will be specific to exposures that have varying distributions in cases. This study investigated whether minimizing the potential for such confounding strengthened the evidence for a genetic candidate currently unsupported at the genome-wide level.Entities:
Keywords: FKBP5; GWAS; cannabis; childhood adversity; confounding factors; gene–environment; missing heritability; psychosis
Year: 2014 PMID: 25101008 PMCID: PMC4101879 DOI: 10.3389/fpsyt.2014.00084
Source DB: PubMed Journal: Front Psychiatry ISSN: 1664-0640 Impact factor: 4.157
Figure 1Flow diagram and numerical breakdown of outcomes for subject recruitment and genotyping.
Main effects of environmental risk factors and .
| Environmental variable | Variant | Unaffected controls | Psychosis cases | Association with psychotic disorder | ||
|---|---|---|---|---|---|---|
| Unadjusted OR (95% CI); | Adjusted | |||||
| Separation from parent before 17 ( | No | 261 | 138 (63.6) | 123 (44.6) | 2.17 (1.5–3.1); <0.0001 | 1.96 (1.3–2.9); 0.001 |
| Yes | 232 | 79 (36.4) | 153 (55.4) | |||
| Physical abuse before 17 ( | No | 399 | 183 (84.3) | 215 (77.3) | 1.57 (0.99–2.49); 0.06 | 1.30 (0.8–2.12); 0.29 |
| Yes | 97 | 34 (15.7) | 63 (22.7) | |||
| Sexual abuse before age 17 ( | No | 429 | 192 (88.5) | 237 (85.0) | 1.36 (0.80–2.31); 0.26 | 1.39 (0.79–2.46); 0.25 |
| Yes | 67 | 25 (11.5) | 42 (15.0) | |||
| Life-time cannabis use ( | No | 236 | 105 (56.5) | 131 (48.7) | 1.37 (0.94–1.99); 0.10 | 1.31 (0.87–1.96); 0.19 |
| Yes | 219 | 81 (43.5) | 138 (51.3) | |||
| Frequency of cannabis use ( | Non-daily use | 149 | 95 (82.0) | 54 (45.8) | 5.36 (2.95–9.72); <0.0001 | 5.86 (3.02–11.37); <0.0001 |
| Daily Use | 85 | 21 (18.0) | 64 (54.2) | |||
| Type of cannabis use ( | Hash | 84 | 59 (53.2) | 25 (21.4) | 4.16 (2.34–7.44); <0.0001 | 3.44 (1.87–6.32); <0.0001 |
| Skunk | 144 | 52 (46.9) | 92 (78.6) | |||
| CC | 214 | 96 (44.0) | 118 (40.5) | 1.19 (0.92–1.55); 0.18 | 1.10 (0.83–1.46); 0.5 | |
| CT | 228 | 98 (45.0) | 130 (44.7) | |||
| TT | 67 | 24 (11.0) | 43 (14.8) | |||
*Adjusted for sex, age, and genetic ancestry. CI, confidence interval; OR, odds ratio.
Association between environmental risk factors and .
| Environmental variable | Variant | CC | CT | TT | Genotypic association | |
|---|---|---|---|---|---|---|
| Physical abuse before age 17 | No | 408 | 168 (81. 6) | 179 (80. 0) | 52 (78. 9) | 0. 44 (0. 80) |
| Yes | 100 | 38 (18. 4) | 45 (20. 0) | 14 (20. 1) | ||
| Sexual abuse before age 17 | No | 203 | 79 (38. 54) | 106 (47. 5) | 18 (28. 1) | 2. 19 (0. 34) |
| Yes | 289 | 126 (61. 5) | 117 (52. 5) | 46 (71. 9) | ||
| Life-time cannabis use | No | 236 | 95 (50. 53) | 110 (53. 92) | 31 (49. 21) | 0. 66 (0. 72) |
| Yes | 219 | 93 (49. 47) | 94 (46. 08) | 32 (50. 79) | ||
| Frequency of cannabis use | Low | 149 | 61 (62. 2) | 69 (68. 3) | 19 (54. 3) | 2. 85 (0. 24) |
| High | 85 | 37 (37. 8) | 32 (31. 7) | 16 (45. 7) | ||
| Type of cannabis use | Hash-like | 84 | 36 (35. 3) | 37 (37. 4) | 11 (40. 7) | 0. 29 (0. 86) |
| Skunk-like | 144 | 66 (64. 7) | 62 (62. 6) | 16 (59. 3) | ||
| Separation from either parent before 17 | No | 261 | 106 (51. 5) | 129 (57. 8) | 26 (40. 6) | 6. 13 (0. 05) |
| Yes | 232 | 100 (48. 5) | 94 (42. 2) | 38 (59. 4) | ||
| Separation from parent before 17 (CONTROLS) | No | 138 | 62 (65. 2) | 63 (64. 29) | 13 (54. 17) | 1. 06 (0. 59) |
| Yes | 79 | 33 (34. 74) | 35 (35. 71) | 11 (45. 83) | ||
| Separation from parent before 17 (CASES) | No | 123 | 44 (41. 53) | 66 (51. 94) | 13 (31. 71) | 6. 9 (0. 03) |
| Yes | 153 | 67 (58. 47) | 59 (48. 06) | 27 (68. 29) |
*Calculated under an assumed additive genotypic model using a 3 × 2 (2df) chi-square test.
Effect of .
| Genetic model | Model no. | Basic model | Rs1360780 | ||
|---|---|---|---|---|---|
| Main effect; OR (95% CI); | Interaction effect; OR (95% CI); | ||||
| Additive | 1 | Life-time cannabis use | 420 | 1.29 (0.89–1.87); 0.18 | 0.57 (0.26–1.25); 0.16 |
| 2 | Frequency of cannabis use | 227 | 1.63 (0.96–2.77); 0.07 | 0.47 (0.16–1.41); 0.18 | |
| 3 | Type of cannabis used | 220 | 1.54 (0.87–2.7); 0.14 | 0.39 (0.13–1.20); 0.10 | |
| Dominant | 4 | Life-time cannabis use | 420 | 1.54 (0.90–2.93); 0.11 | 0.51 (0.22–1.17); 0.11 |
| 5 | Frequency of cannabis use | 227 | 2.81 (1.23–6.43); 0.02 | 0.31 (0.09–1.04); 0.06 | |
| 6 | Type of cannabis used | 220 | 2.02 (0.89–4.65); 0.10 | 0.34 (0.08–1.04); 0.07 | |
Models 1–6 vary in terms of (i) which cannabis variables are modeled and (ii) the genetic effect model applied (i.e., additivity vs. dominance).
*Basic model: parental separation, genetic ancestry, sex, age, the main effect of rs1360780, and the SNP × separation G × E term.
(CI, confidence interval; OR, odds ratio).
Stratification of association between .
| Parental separation | Adjusted effect of rs1360780; OR (95% CI), |
|---|---|
| Yes ( | 0.89 (0.37–2.17), 0.80 |
| No ( | 2.8 (1.21–6.60), 0.02 |
Genetic terms used in the analysis are dominance-coded and *adjusted for sex, age, genetic ancestry, and frequency of cannabis use. The partitioning of parental separation in this stratified analysis makes the G × E term used in the logistic model (FKBP5 × parental separation) redundant in this analysis. CI, confidence interval; OR, odds ratio.
Figure 2Environmental vs. genetic power in the conditioned analyses of association with psychotic disorder. Life-time cannabis use, cannabis type, and frequency of cannabis use are associated with low (23%), intermediate (68%), and high (98%) statistical power (respectively) (Table S5 in Supplementary Materials). These power analyses confirm that conditioning on the more discriminating measures of cannabis use leads to larger genetic effects and, correspondingly, better detection efficiency (genetic power). The same pattern was also seen when these analyses were repeated under an additive genetic model.