Literature DB >> 25100733

The RNA-editing enzyme APOBEC1 requires heterogeneous nuclear ribonucleoprotein Q isoform 6 for efficient interaction with interleukin-8 mRNA.

Yuko Shimizu1, Hironori Nishitsuji2, Hiroyuki Marusawa3, Saneyuki Ujino2, Hiroshi Takaku4, Kunitada Shimotohno2.   

Abstract

Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide 1 (APOBEC1) is an intestine-specific RNA-binding protein. However, inflammation or exposure to DNA-damaging agents can induce ectopic APOBEC1 expression, which can result in hepatocellular hyperplasia in animal models. To identify its RNA targets, FLAG-tagged APOBEC1 was immunoprecipitated from transfected HuH7.5 hepatocellular carcinoma cells and analyzed using DNA microarrays. The interleukin-8 (IL8) mRNA was the most abundant co-precipitated RNA. Exogenous APOBEC1 expression increased IL8 production by extending the half-life of the IL8 mRNA. A cluster of AU-rich elements in the 3'-UTR of IL8 was essential to the APOBEC1-mediated increase in IL8 production. Notably, IL8 mRNA did not co-immunoprecipitate with APOBEC1 from lysates of other cell types at appreciable levels; therefore, other factors may enhance the association between APOBEC1 and IL8 mRNA in a cell type-specific manner. A yeast two-hybrid analysis and siRNA screen were used to identify proteins that enhance the interaction between APOBEC1 and IL8 mRNA. Heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) was essential to the APOBEC1/IL8 mRNA association in HuH7.5 cells. Of the seven hnRNPQ isoforms, only hnRNPQ6 enabled APOBEC1 to bind to IL8 mRNA when overexpressed in HEK293 cells, which expressed the lowest level of endogenous hnRNPQ6 among the cell types examined. The results of a reporter assay using a luciferase gene fused to the IL8 3'-UTR were consistent with the hypothesis that hnRNPQ6 is required for APOBEC1-enhanced IL8 production. Collectively, these data indicate that hnRNPQ6 promotes the interaction of APOBEC1 with IL8 mRNA and the subsequent increase in IL8 production.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Cytokine; RNA Abundance; RNA-Protein Interaction; RNA-binding Protein; Ribonuclear Protein (RNP)

Mesh:

Substances:

Year:  2014        PMID: 25100733      PMCID: PMC4176254          DOI: 10.1074/jbc.M114.563221

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

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Journal:  Biochem Biophys Res Commun       Date:  2001-04-13       Impact factor: 3.575

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3.  Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing.

Authors:  V Blanc; N Navaratnam; J O Henderson; S Anant; S Kennedy; A Jarmuz; J Scott; N O Davidson
Journal:  J Biol Chem       Date:  2000-12-27       Impact factor: 5.157

4.  Novel role for RNA-binding protein CUGBP2 in mammalian RNA editing. CUGBP2 modulates C to U editing of apolipoprotein B mRNA by interacting with apobec-1 and ACF, the apobec-1 complementation factor.

Authors:  S Anant; J O Henderson; D Mukhopadhyay; N Navaratnam; S Kennedy; J Min; N O Davidson
Journal:  J Biol Chem       Date:  2001-09-27       Impact factor: 5.157

5.  Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA.

Authors:  A Mehta; M T Kinter; N E Sherman; D M Driscoll
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

6.  A DnaJ protein, apobec-1-binding protein-2, modulates apolipoprotein B mRNA editing.

Authors:  P P Lau; H Villanueva; K Kobayashi; M Nakamuta; B H Chang; L Chan
Journal:  J Biol Chem       Date:  2001-10-02       Impact factor: 5.157

7.  Apobec-1 protects intestine from radiation injury through posttranscriptional regulation of cyclooxygenase-2 expression.

Authors:  Shrikant Anant; Nabendu Murmu; Courtney W Houchen; Debnath Mukhopadhyay; Terrence E Riehl; Stephen G Young; Aubrey R Morrison; William F Stenson; Nicholas O Davidson
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8.  Involvement of a chaperone regulator, Bcl2-associated athanogene-4, in apolipoprotein B mRNA editing.

Authors:  Paul P Lau; Lawrence Chan
Journal:  J Biol Chem       Date:  2003-10-13       Impact factor: 5.157

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Journal:  J Biol Chem       Date:  1991-09-05       Impact factor: 5.157

10.  The apolipoprotein B mRNA editing complex performs a multifunctional cycle and suppresses nonsense-mediated decay.

Authors:  Ann Chester; Angelika Somasekaram; Maria Tzimina; Adam Jarmuz; Jane Gisbourne; Raymond O'Keefe; James Scott; Naveenan Navaratnam
Journal:  EMBO J       Date:  2003-08-01       Impact factor: 11.598

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Authors:  Samiran Mondal; Nasim A Begum; Wenjun Hu; Tasuku Honjo
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2.  Re-editing the paradigm of Cytidine (C) to Uridine (U) RNA editing.

Authors:  Nicolas Fossat; Patrick P L Tam
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

3.  Identification of DNA cleavage- and recombination-specific hnRNP cofactors for activation-induced cytidine deaminase.

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Journal:  Cell Death Dis       Date:  2017-01-12       Impact factor: 8.469

6.  Comparative transcriptomics reveals specific responding genes associated with atherosclerosis in rabbit and mouse models.

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Review 7.  C-to-U RNA Editing: A Site Directed RNA Editing Tool for Restoration of Genetic Code.

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  7 in total

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