| Literature DB >> 25099571 |
Shuang-Gang Hu, Mei Zou, Guang-Xin Yao, Wu-Bin Ma, Qin-Ling Zhu, Xiang-Qi Li, Zi-Jiang Chen, Yun Sun1.
Abstract
BACKGROUND: The majority of beta-defensin family members are exclusively expressed in the epididymis, and some members have been shown to play essential roles in sperm maturation and fertility in rats, mice and humans. Therefore, beta-defensins are hypothesized to be potential targets for contraception and infertility diagnosis and treatment. Clarifying the regulatory mechanisms for the expression of these genes is necessary. Androgen/androgen receptor (AR) signaling plays an important regulatory role in epididymal structure and function. However, very little is known about the androgenic regulation on the production and secretion of the epididymal beta-defensins.Entities:
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Year: 2014 PMID: 25099571 PMCID: PMC4127520 DOI: 10.1186/1477-7827-12-76
Source DB: PubMed Journal: Reprod Biol Endocrinol ISSN: 1477-7827 Impact factor: 5.211
Gene ID, RefSeq accession number and known aliases of 23 beta-defensins
| 13214 | NM_007843.3 | AL590630.1, AW260221, BD-1 | |
| 77674 | NM_152802.3 | 9230103N16Rik, BD-12 | |
| 246083 | NM_139223.3 | AL590619.7, BD-13 | |
| 246082 | NM_139222.3 | AL590619.5, BD-15 | |
| 654460 | NM_001039123.1 | BD-18, EG654460, mBD-18 | |
| 246700 | NM_145157.3 | BD-19, Defb24, Tdl, mBD-19 | |
| 319579 | NM_176950.3 | RP23-453 K8.4, BD-20, mBD-20 | |
| 442835 | NM_001002791.2 | RP23-453 K8.5, 9230002F21Rik | |
| 654459 | NM_001039122.1 | RP23-35I8.8, BD-25, mBD-25 | |
| 75400 | NM_001001444.2 | RP23-35I8.1, BD-29, mBD-29 | |
| 73670 | NM_001039566.2 | BD-30, mBD-30 | |
| 360211 | NM_183035.1 | BD-34 | |
| 246084 | NM_139224.1 | BD-35 | |
| 353320 | NM_181683.2 | BD-37 | |
| 360214 | NM_183038.2 | BD-39 | |
| 360217 | NM_183039.3 | BD-40 | |
| 77673 | NM_183124.3 | Bd-41, Defb16 | |
| 619548 | NM_001034910.3 | Defb44 | |
| 433490 | NM_001037752.2 | Defb27; | |
| 100503992 | NM_001025353.2 | Gm6040, EG574083 | |
| 100504014 | NM_001177471.1 | Gm15056, | |
| 78128 | NM_153115.1 | Bin1b, EP2Q, EP2e, Spag11 | |
| 546038 | NM_001039563.3 | Ep2c/h; EG546038; Spag11c/h |
Figure 1The responsiveness of epididymal beta-defensins to androgen manipulation as revealed by quantitative RT-PCR. RNA samples were prepared from the caput epididymides of intact mice (Intact) and mice castrated for 7 days and supplemented with oil (Oil) or testosterone propionate (TP). Different genes showed different responsiveness to androgen. A) The gene expression was fully or partially dependent on androgen. *: P < 0.01 Oil group versus Intact group; **: P < 0.05 TP group versus Oil group. ***: P < 0.05 TP group versus Intact group. B) The expression of Defb25 was dependent on testicular factors and not on androgen, whereas the expression of other genes was independent on testicular factors or androgen. *: P < 0.05 Oil group versus Intact group.
Figure 2Screenshots of the UCSC genome browser mm9 showing AR binding sites around the AR-target beta-defensin genes. The figure was generated by uploading the file containing unique ChIP-seq tags in the WIG format to the UCSC genome browser. The upper blue track shows the tag density, and the AR-target beta-defensin genes are shown at the bottom. The black arrow indicates gene orientation. Sequence positions and other generic UCSC annotations were removed for clarity. One peak formed by a large amount of localized ChIP-seq tags represents an AR binding site. Defb19 was associated with two peaks, whereas Defb30 and Defb42 share one peak. Defb18, 34, 39, 41, 20, 15, 37, and 22 and Spag11a were associated with one peak respectively.
Characterization of ARBSs associated with androgen regulated epididymal beta-defensins
| chr8 | −1914 | upstream | 113.6 | Yes | −1844 | CGGCAACTTTCTGTACTTT | |
| | | | | | | −1822 | GAAGGACAGAAAGTCCTGT |
| | | | | | | −1740 | GATGGACACTTTGTCCTCT |
| chr8 | 2842 | downstream | 49.3 | Yes | 2726 | TCAGCACTTACTGTTCCTG | |
| chr1 | −6911 | upstream | 36.9 | Yes | −7011 | GAATCTTTTTATGTTCTCT | |
| | | | | | | −7020 | TATGTTCTCTATGTTCTGT |
| chr2 | −5979 | upstream | 32.9 | Yes | −6075 | ATCGATCGCTGTGTTCCCA | |
| | | | | | | −6106 | TGGGAGCCACTTGTTCCTT |
| | chr2 | −3900 | upstream | 27.2 | Yes | −3970 | ATGCTATAGTTTGTTCTCA |
| | | | | | | −4012 | TAGGAACAGCTTGGCCTGA |
| chr2 | −698 | upstream | 48.3 | No | | | |
| chr14 | −4251 | upstream | 33.2 | No | | | |
| chr8 | −222 | upstream | 21.3 | Yes | −110 | ATGGGGTGATTTGTTCTGA | |
| chr8 | 1659 | intron | 19.0 | Yes | 1609 | AGGGAAAGCTGTGTTCTTG | |
| | | | | | | 1555 | GATCAAAGCCTTGTTCTTT |
| | | | | | | 1531 | CAAGGACACTGTGTGCTGA |
| chr8 | 1750 | intron | 40.9 | Yes | 1647 | TGGGCACACAGTGGCCTTG | |
| chr1 | −7576 | upstream | 63.6 | Yes | −7633 | CAAGAACACTCTGTGATAT | |
| | | | | | | −7692 | CCAGAACAACATGTAACAT |
| chr14 | −4893 | upstream | 33.2 | No | | | |
| chr2 | −9848 | upstream | 60.5 | Yes | −9895 | ACAGCATGCTGTGTTCTTC | |
| −9958 | TTAGAACAACACGATCTCA |
ARBS, androgen receptor binding site; TSS, transcription start site; ARE, androgen response element.
Figure 3AR occupancies on epididymal AR binding sites associated with androgen-regulated beta-defensins as revealed by ChIP-PCR (A) or ChIP-qPCR (B). A) Input sample (IP) and ChIP samples of anti-AR antibody (AR) or normal IgG (IgG) were analyzed using PCR to confirm AR binding at eleven epididymal target loci. B) ChIP samples were prepared from the caput epididymidis of intact mice (Intact) and mice castrated for 7 days and supplemented with oil (Oil) or testosterone propionate (TP) for an additional 2 days. Enrichment folds were calculated using IgG enrichment as a control. The data are presented as the mean ± SD of three replicates.