Literature DB >> 25093524

Expanding the RNA-recognition code of PUF proteins.

Traci M Tanaka Hall1.   

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Year:  2014        PMID： 25093524     DOI： 10.1038/nsmb.2863

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  20 in total

1.  A single spacer nucleotide determines the specificities of two mRNA regulatory proteins.

Authors:  Laura Opperman; Brad Hook; Mia DeFino; David S Bernstein; Marvin Wickens
Journal:  Nat Struct Mol Biol       Date:  2005-11       Impact factor: 15.369

2.  Engineering RNA sequence specificity of Pumilio repeats.

Authors:  Cheom-Gil Cheong; Traci M Tanaka Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-05       Impact factor: 11.205

3.  mRNA regulation by Puf domain proteins.

Authors:  Robin P Wharton; Aneel K Aggarwal
Journal:  Sci STKE       Date:  2006-09-26

4.  Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein.

Authors:  Yeming Wang; Laura Opperman; Marvin Wickens; Traci M Tanaka Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-09       Impact factor: 11.205

5.  Stacking interactions in PUF-RNA complexes.

Authors:  Yvonne Yiling Koh; Yeming Wang; Chen Qiu; Laura Opperman; Leah Gross; Traci M Tanaka Hall; Marvin Wickens
Journal:  RNA       Date:  2011-03-03       Impact factor: 4.942

6.  A universal code for RNA recognition by PUF proteins.

Authors:  Aleksandra Filipovska; Muhammad F M Razif; Karoline K A Nygård; Oliver Rackham
Journal:  Nat Chem Biol       Date:  2011-05-15       Impact factor: 15.040

7.  Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity.

Authors:  Zachary T Campbell; Devesh Bhimsaria; Cary T Valley; Jose A Rodriguez-Martinez; Elena Menichelli; James R Williamson; Aseem Z Ansari; Marvin Wickens
Journal:  Cell Rep       Date:  2012-05-31       Impact factor: 9.423

8.  A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs.

Authors:  Deyu Zhu; Craig R Stumpf; Joseph M Krahn; Marvin Wickens; Traci M Tanaka Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

9.  Engineering splicing factors with designed specificities.

Authors:  Yang Wang; Cheom-Gil Cheong; Traci M Tanaka Hall; Zefeng Wang
Journal:  Nat Methods       Date:  2009-10-04       Impact factor: 28.547

10.  Live-cell imaging of viral RNA genomes using a Pumilio-based reporter.

Authors:  Jens Tilsner; Olga Linnik; Nynne M Christensen; Karen Bell; Ian M Roberts; Christophe Lacomme; Karl J Oparka
Journal:  Plant J       Date:  2008-11-17       Impact factor: 6.417
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  10 in total

1.  Target selection by natural and redesigned PUF proteins.

Authors:  Douglas F Porter; Yvonne Y Koh; Brett VanVeller; Ronald T Raines; Marvin Wickens
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

2.  PPR-SMR protein SOT1 has RNA endonuclease activity.

Authors:  Wen Zhou; Qingtao Lu; Qingwei Li; Lei Wang; Shunhua Ding; Aihong Zhang; Xiaogang Wen; Lixin Zhang; Congming Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

3.  Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.

Authors:  Chen Qiu; Robert C Dutcher; Douglas F Porter; Yoav Arava; Marvin Wickens; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

4.  Expanding the binding specificity for RNA recognition by a PUF domain.

Authors:  Wei Zhou; Daniel Melamed; Gabor Banyai; Cindy Meyer; Thomas Tuschl; Marvin Wickens; Junyue Cao; Stanley Fields
Journal:  Nat Commun       Date:  2021-08-24       Impact factor: 14.919

5.  Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.

Authors:  Zhi-Ping Liu; Shutang Liu; Ruitang Chen; Xiaopeng Huang; Ling-Yun Wu
Journal:  BMC Bioinformatics       Date:  2017-01-11       Impact factor: 3.169

6.  Structural basis for the specific recognition of 18S rRNA by APUM23.

Authors:  Hongyu Bao; Na Wang; Chongyuan Wang; Yiyang Jiang; Jiuyang Liu; Li Xu; Jihui Wu; Yunyu Shi
Journal:  Nucleic Acids Res       Date:  2017-11-16       Impact factor: 16.971

7.  Combinatorial control of messenger RNAs by Pumilio, Nanos and Brain Tumor Proteins.

Authors:  René M Arvola; Chase A Weidmann; Traci M Tanaka Hall; Aaron C Goldstrohm
Journal:  RNA Biol       Date:  2017-04-17       Impact factor: 4.652

8.  The evolution of the Puf superfamily of proteins across the tree of eukaryotes.

Authors:  Vladimíra Najdrová; Courtney W Stairs; Martina Vinopalová; Luboš Voleman; Pavel Doležal
Journal:  BMC Biol       Date:  2020-06-30       Impact factor: 7.431

9.  RNA regulatory networks diversified through curvature of the PUF protein scaffold.

Authors:  Daniel Wilinski; Chen Qiu; Christopher P Lapointe; Markus Nevil; Zachary T Campbell; Traci M Tanaka Hall; Marvin Wickens
Journal:  Nat Commun       Date:  2015-09-14       Impact factor: 14.919

10.  Single-stranded telomere-binding protein employs a dual rheostat for binding affinity and specificity that drives function.

Authors:  Leslie W Glustrom; Kenneth R Lyon; Margherita Paschini; Cynthia M Reyes; Nicholas V Parsonnet; Tasha B Toro; Victoria Lundblad; Deborah S Wuttke
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-24       Impact factor: 11.205
  10 in total

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