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Literature DB >> 25093401

The complete chloroplast genome of Phalaenopsis "Tiny Star".

Goon-Bo Kim¹, Youngeun Kwon¹, Hee-Ju Yu², Ki-Byung Lim³, Jae-Hwan Seo⁴, Jeong-Hwan Mun¹.

Abstract

We determined the complete chloroplast DNA sequence of Phalaenopsis "Tiny Star" based on Illumina sequencing. The total length of the chloroplast genome is 148,918 bp long with GC content of 36.7%. It contains 70 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Comparative analysis with the reported orchid chloroplast sequences identified unique InDel variations in the "Tiny Star" chloroplast genome that have potential as genetic markers to investigate the maternal lineage of Phalaenopsis and Doritaenopsis cultivars.

Keywords: Chloroplast genome; Doritaenopsis; InDel; Phalaenopsis; orchid

Mesh：

Year: 2014 PMID： 25093401 DOI： 10.3109/19401736.2014.945566

Source DB: PubMed Journal: Mitochondrial DNA A DNA Mapp Seq Anal ISSN： 2470-1394 Impact factor: 1.514

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Cited

6 in total

Review 1. Chloroplast genomes: diversity, evolution, and applications in genetic engineering.

Authors: Henry Daniell; Choun-Sea Lin; Ming Yu; Wan-Jung Chang
Journal: Genome Biol Date: 2016-06-23 Impact factor: 13.583

2. Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz.

Authors: Weiwei Zheng; Jinhui Chen; Zhaodong Hao; Jisen Shi
Journal: Int J Mol Sci Date: 2016-07-07 Impact factor: 5.923

6. Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries.

Authors: Hyoung Tae Kim; Jung Sung Kim; Michael J Moore; Kurt M Neubig; Norris H Williams; W Mark Whitten; Joo-Hwan Kim
Journal: PLoS One Date: 2015-11-11 Impact factor: 3.240

6 in total

The complete chloroplast genome of Phalaenopsis "Tiny Star".

Review 1. Chloroplast genomes: diversity, evolution, and applications in genetic engineering.

2. Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz.

3. Complete plastome sequence of Phalaenopsis cornu-cervi (Vandeae, Orchidaceae).

4. The complete chloroplast genome sequence of Phalaenopsis lowii (Orchidaceae).

Review 5. In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing.

6. Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries.