Literature DB >> 25092650

Inhibition of calcium-calmodulin complex formation by vasorelaxant basic dipeptides demonstrated by in vitro and in silico analyses.

Thanutchaporn Kumrungsee1, Tomomi Saiki1, Sayaka Akiyama1, Kentaro Nakashima1, Mitsuru Tanaka1, Yutaro Kobayashi1, Toshiro Matsui2.   

Abstract

BACKGROUND: Tryptophan-histidine (Trp-His) was found to suppress the activity of the Ca²⁺/calmodulin (CaM)-dependent protein kinases II (CaMKII), which requires the Ca²⁺-CaM complex for an initial activation. In this study, we attempted to clarify whether Trp-His inhibits Ca²⁺-CaM complex formation, a CaMKII activator.
METHODS: The ability of Trp-His and other peptides to inhibit Ca²⁺-CaM complex formation was investigated by a Ca²⁺-encapsulation fluorescence assay. The peptide-CaM interactions were illustrated by molecular dynamic simulation.
RESULTS: We showed that Trp-His inhibited Ca²⁺-CaM complex formation with a 1:1 binding stoichiometry of the peptide to CaM, considering that Trp-His reduced Hill coefficient of Ca²⁺-CaM binding from 2.81 to 1.92. His-Trp also showed inhibitory activity, whereas Trp+His, 3-methyl His-Trp, and Phe-His did not show significant inhibitory activity, suggesting that the inhibitory activity was due to a peptide skeleton (irrespective of the sequence), a basic amino acid, a His residue, the N hydrogen atom of its imidazole ring, and Trp residue. In silico studies suggested the possibility that Trp-His and His-Trp interacted with the Ca²⁺-binding site of CaM by forming hydrogen bonds with key Ca²⁺-binding residues of CaM, with a binding free energy of -49.1 and -68.0 kJ/mol, respectively.
CONCLUSIONS: This is the first study demonstrating that the vasoactive dipeptide Trp-His possesses inhibitory activity against Ca²⁺-CaM complex formation, which may elucidate how Trp-His inhibited CaMKII in a previous study. GENERAL SIGNIFICANCE: The results provide a basic idea that could lead to the development of small peptides binding with high affinity to CaM and inhibiting Ca²⁺-CaM complex formation in the future.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ca(2+)-calmodulin complex; Dipeptide; MD simulation

Mesh:

Substances:

Year:  2014        PMID: 25092650     DOI: 10.1016/j.bbagen.2014.07.020

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


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