Literature DB >> 25085913

lncRNAs: linking RNA to chromatin.

John L Rinn1.   

Abstract

Numerous studies over the past decade have identified increasing numbers of long noncoding RNAs (lncRNAs) across many organisms. Research since has shown that lncRNAs constitute an important layer of genome regulation in diverse biological processes and disease. Here, we discuss the common emerging theme of lncRNAs interfacing with epigenetic machinery. This, in turn, modulates the activity and localization of the epigenetic machinery during cell fate specification.
Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID： 25085913      PMCID： PMC4107985          DOI： 10.1101/cshperspect.a018614

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN： 1943-0264            Impact factor:   10.005


  7 in total

1.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

2.  The eukaryotic genome as an RNA machine.

Authors:  Paulo P Amaral; Marcel E Dinger; Tim R Mercer; John S Mattick
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

Review 3.  Dosage compensation in mammals.

Authors:  Neil Brockdorff; Bryan M Turner
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-03-02       Impact factor: 10.005

4.  Genome-wide identification of polycomb-associated RNAs by RIP-seq.

Authors:  Jing Zhao; Toshiro K Ohsumi; Johnny T Kung; Yuya Ogawa; Daniel J Grau; Kavitha Sarma; Ji Joon Song; Robert E Kingston; Mark Borowsky; Jeannie T Lee
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

5.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

6.  Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.

Authors:  Ahmad M Khalil; Mitchell Guttman; Maite Huarte; Manuel Garber; Arjun Raj; Dianali Rivea Morales; Kelly Thomas; Aviva Presser; Bradley E Bernstein; Alexander van Oudenaarden; Aviv Regev; Eric S Lander; John L Rinn
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

7.  Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.

Authors:  Rajnish A Gupta; Nilay Shah; Kevin C Wang; Jeewon Kim; Hugo M Horlings; David J Wong; Miao-Chih Tsai; Tiffany Hung; Pedram Argani; John L Rinn; Yulei Wang; Pius Brzoska; Benjamin Kong; Rui Li; Robert B West; Marc J van de Vijver; Saraswati Sukumar; Howard Y Chang
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962
  7 in total
  68 in total

Review 1.  Long noncoding RNA and its contribution to autism spectrum disorders.

Authors:  Jie Tang; Yizhen Yu; Wei Yang
Journal:  CNS Neurosci Ther       Date:  2017-06-20       Impact factor: 5.243

Review 2.  Targeting the epigenome in malignant pleural mesothelioma.

Authors:  Kaitlin C McLoughlin; Andrew S Kaufman; David S Schrump
Journal:  Transl Lung Cancer Res       Date:  2017-06

3.  Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing.

Authors:  Daniel B Lipka; Qi Wang; Nina Cabezas-Wallscheid; Daniel Klimmeck; Dieter Weichenhan; Carl Herrmann; Amelie Lier; David Brocks; Lisa von Paleske; Simon Renders; Peer Wünsche; Petra Zeisberger; Lei Gu; Simon Haas; Marieke Ag Essers; Benedikt Brors; Roland Eils; Andreas Trumpp; Michael D Milsom; Christoph Plass
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

Review 4.  Transcriptional silencing by polycomb-group proteins.

Authors:  Ueli Grossniklaus; Renato Paro
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-11-03       Impact factor: 10.005

Review 5.  Long non-coding RNA and chromatin remodeling.

Authors:  Pei Han; Ching-Pin Chang
Journal:  RNA Biol       Date:  2015-07-15       Impact factor: 4.652

Review 6.  Dosage compensation in mammals.

Authors:  Neil Brockdorff; Bryan M Turner
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-03-02       Impact factor: 10.005

7.  Age-Related Expression of a Repeat-Rich Intergenic Long Noncoding RNA in the Rat Brain.

Authors:  Sukhleen Kour; Pramod C Rath
Journal:  Mol Neurobiol       Date:  2016-01-11       Impact factor: 5.590

Review 8.  Could lncRNAs be the missing links in control of mesenchymal stem cell differentiation?

Authors:  Coralee E Tye; Jonathan A R Gordon; Lori A Martin-Buley; Janet L Stein; Jane B Lian; Gary S Stein
Journal:  J Cell Physiol       Date:  2015-03       Impact factor: 6.384

Review 9.  Genomic imprinting in mammals.

Authors:  Denise P Barlow; Marisa S Bartolomei
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-02-01       Impact factor: 10.005

10.  Long non-coding RNA ZEB2-AS1 promotes proliferation and inhibits apoptosis in human lung cancer cells.

Authors:  Yang Guo; Ying Hu; Mingming Hu; Jiabei He; Baolan Li
Journal:  Oncol Lett       Date:  2018-02-01       Impact factor: 2.967
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