Literature DB >> 25084386

Expression, high-pressure refolding, purification, crystallization and preliminary X-ray analysis of a novel single-strand-specific 3'-5' exonuclease PhoExo I from Pyrococcus horikoshii OT3.

Ken-ichi Miyazono1, Kanae Tsutsumi1, Yoshizumi Ishino2, Masaru Tanokura1.   

Abstract

PhoExo I is a single-strand-specific 3'-5' exonuclease from Pyrococcus horikoshii OT3 and is thought to be involved in a Thermococcales-specific DNA-repair pathway. The recombinant PhoExo I protein was produced as inclusion bodies in Escherichia coli cells. Solubilization of the inclusion bodies was performed by the high-pressure refolding method and highly purified protein was subjected to crystallization by the sitting-drop vapour-diffusion method at 20°C. A crystal of PhoExo I was obtained in a reservoir solution consisting of 0.1 M Tris-HCl pH 8.9, 27% PEG 6000 and diffracted X-rays to 1.52 Å resolution. The crystal of PhoExo I belonged to space group H32, with unit-cell parameters a = b = 112.07, c = 202.28 Å. The crystal contained two PhoExo I molecules in the asymmetric unit.

Entities:  

Keywords:  DNA repair; PhoExo I; Pyrococcus horikoshii; high-pressure refolding; nuclease

Mesh:

Substances:

Year:  2014        PMID: 25084386      PMCID: PMC4118808          DOI: 10.1107/S2053230X14012734

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  17 in total

1.  Refolding of the recombinant protein OmpA70 from Leptospira interrogans from inclusion bodies using high hydrostatic pressure and partial characterization of its immunological properties.

Authors:  Tatiana R Fraga; Rosa M Chura-Chambi; Amane P Gonçales; Zenaide M Morais; Sílvio A Vasconcellos; Ligia Morganti; Elizabeth A L Martins
Journal:  J Biotechnol       Date:  2010-05-05       Impact factor: 3.307

Review 2.  Confronting high-throughput protein refolding using high pressure and solution screens.

Authors:  M Walid Qoronfleh; Lyndal K Hesterberg; Matthew B Seefeldt
Journal:  Protein Expr Purif       Date:  2007-06-02       Impact factor: 1.650

3.  UV and ethyl methanesulfonate effects in hyperthermophilic archaea and isolation of auxotrophic mutants of Pyrococcus strains.

Authors:  L Watrin; D Prieur
Journal:  Curr Microbiol       Date:  1996-12       Impact factor: 2.188

4.  Refolding of endostatin from inclusion bodies using high hydrostatic pressure.

Authors:  Rosa Maria Chura-Chambi; Luis Antonio Genova; Regina Affonso; Ligia Morganti
Journal:  Anal Biochem       Date:  2008-04-23       Impact factor: 3.365

Review 5.  Application of high hydrostatic pressure to dissociate aggregates and refold proteins.

Authors:  Matthew B Seefeldt; Mary S Rosendahl; Jeffrey L Cleland; Lyndal K Hesterberg
Journal:  Curr Pharm Biotechnol       Date:  2009-06       Impact factor: 2.837

6.  Spontaneous mutation in a thermoacidophilic archaeon: evaluation of genetic and physiological factors

Authors: 
Journal:  Arch Microbiol       Date:  1998-01       Impact factor: 2.552

7.  Repair of extensive ionizing-radiation DNA damage at 95 degrees C in the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  J DiRuggiero; N Santangelo; Z Nackerdien; J Ravel; F T Robb
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  A novel single-strand specific 3'-5' exonuclease found in the hyperthermophilic archaeon, Pyrococcus furiosus.

Authors:  Kazuo Tori; Sonoko Ishino; Shinichi Kiyonari; Saki Tahara; Yoshizumi Ishino
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

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  2 in total

1.  Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I.

Authors:  Ken-Ichi Miyazono; Sonoko Ishino; Kanae Tsutsumi; Tomoko Ito; Yoshizumi Ishino; Masaru Tanokura
Journal:  Nucleic Acids Res       Date:  2015-07-02       Impact factor: 16.971

2.  Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus.

Authors:  Ken-Ichi Miyazono; Sonoko Ishino; Naruto Makita; Tomoko Ito; Yoshizumi Ishino; Masaru Tanokura
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

  2 in total

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