Literature DB >> 25084378

Cloning, expression, purification, crystallization and X-ray crystallographic analysis of D-lactate dehydrogenase from Lactobacillus jensenii.

Sangwoo Kim1, Yong Hwan Kim2, Kyung-Jin Kim1.   

Abstract

The thermostable D-lactate dehydrogenase from Lactobacillus jensenii (LjD-LDH) is a key enzyme for the production of the D-form of lactic acid from pyruvate concomitant with the oxidation of NADH to NAD(+). The polymers of lactic acid are used as biodegradable bioplastics. The LjD-LDH protein was crystallized using the hanging-drop vapour-diffusion method in the presence of 28%(w/v) polyethylene glycol 400, 100 mM Tris-HCl pH 9, 200 mM magnesium sulfate at 295 K. X-ray diffraction data were collected to a maximum resolution of 2.1 Å. The crystal belonged to space group P3121, with unit-cell parameters a = b = 90.5, c = 157.8 Å. With two molecules per asymmetric unit, the crystal volume per unit protein weight (VM) is 2.58 Å(3) Da(-1), which corresponds to a solvent content of approximately 52.3%. The structure was solved by single-wavelength anomalous dispersion using a selenomethionine derivative.

Entities:  

Keywords:  Lactobacillus jensenii; bioplastics; d-lactate dehydrogenase; polylactic acid

Mesh:

Substances:

Year:  2014        PMID: 25084378      PMCID: PMC4118800          DOI: 10.1107/S2053230X14012606

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  11 in total

1.  Linking crystallographic model and data quality.

Authors:  P Andrew Karplus; Kay Diederichs
Journal:  Science       Date:  2012-05-25       Impact factor: 47.728

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  High resolution structures of holo and apo formate dehydrogenase.

Authors:  V S Lamzin; Z Dauter; V O Popov; E H Harutyunyan; K S Wilson
Journal:  J Mol Biol       Date:  1994-02-25       Impact factor: 5.469

4.  Physically crosslinked dextran hydrogels by stereocomplex formation of lactic acid oligomers: degradation and protein release behavior.

Authors:  S J de Jong; B van Eerdenbrugh; C F van Nostrum; J J Kettenes-van den Bosch; W E Hennink
Journal:  J Control Release       Date:  2001-04-28       Impact factor: 9.776

Review 5.  Practical implications of lactate and pyruvate metabolism by lactic acid bacteria in food and beverage fermentations.

Authors:  S-Q Liu
Journal:  Int J Food Microbiol       Date:  2003-06-15       Impact factor: 5.277

6.  A randomized study of the efficacy and safety of injectable poly-L-lactic acid versus human-based collagen implant in the treatment of nasolabial fold wrinkles.

Authors:  Rhoda S Narins; Leslie Baumann; Fredric S Brandt; Steven Fagien; Scott Glazer; Nicholas J Lowe; Gary D Monheit; Marta I Rendon; Rod J Rohrich; Wm Philip Werschler
Journal:  J Am Acad Dermatol       Date:  2010-03       Impact factor: 11.527

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Domain closure, substrate specificity and catalysis of D-lactate dehydrogenase from Lactobacillus bulgaricus.

Authors:  Adelia Razeto; Sunil Kochhar; Herbert Hottinger; Miroslava Dauter; Keith S Wilson; Victor S Lamzin
Journal:  J Mol Biol       Date:  2002-04-19       Impact factor: 5.469

9.  Roles of his205, his296, his303 and Asp259 in catalysis by NAD+-specific D-lactate dehydrogenase.

Authors:  S Kochhar; V S Lamzin; A Razeto; M Delley; H Hottinger; J E Germond
Journal:  Eur J Biochem       Date:  2000-03

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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