Literature DB >> 25084062

In silico model for predicting soil organic carbon normalized sorption coefficient (K(OC)) of organic chemicals.

Ya Wang1, Jingwen Chen1, Xianhai Yang1, Felichesmi Lyakurwa1, Xuehua Li2, Xianliang Qiao1.   

Abstract

As a kind of in silico method, the methodology of quantitative structure-activity relationship (QSAR) has been shown to be an efficient way to predict soil organic carbon normalized sorption coefficients (KOC) values. In the present study, a total of 824 logKOC values were used to develop and validate a QSAR model for predicting KOC values. The model statistics parameters, adjusted determination coefficient (R(2)adj) of 0.854, the root mean square error (RMSE) of 0.472, the leave-one-out cross-validation squared correlation coefficient (Q(2)LOO) of 0.850, the external validation coefficient Q(2)ext of 0.761 and the RMSEext of 0.558 were obtained, which indicate satisfactory goodness of fit, robustness and predictive ability. The squared Moriguchi octanol-water partition coefficient (MLOGP2) explained 66.5% of the logKOC variance. The applicability domain of the current model has been extended to emerging pollutants like polybrominated diphenyl ethers, perfluorochemicals and heterocyclic toxins. The developed model can be used to predict the compounds with various functional groups including C=C, -C≡C-, -OH, -O-, -CHO, C=O, -C=O(O), -COOH, -C6H5, -NO2, -NH2, -NH-, N-, -N-N-, -NH-C(O)-NH-, -O-C(O)-NH2, -C(O)-NH2, -X(F, Cl, Br, I), -S-, -SH, -S(O)2-, -OS(O)2-, -NH-S(O)2-, (SR)2PH(OR)2 and Si.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Multiple linear regression (MLR); Predictive ability; Quantitative structure–activity relationship (QSAR); Soil organic carbon normalized sorption coefficient (K(OC))

Mesh:

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Year:  2014        PMID: 25084062     DOI: 10.1016/j.chemosphere.2014.07.007

Source DB:  PubMed          Journal:  Chemosphere        ISSN: 0045-6535            Impact factor:   7.086


  3 in total

1.  MOA-based linear and nonlinear QSAR models for predicting the toxicity of organic chemicals to Vibrio fischeri.

Authors:  Shengnan Zhang; Ning Wang; Limin Su; Xiaoyan Xu; Chao Li; Weichao Qin; Yuanhui Zhao
Journal:  Environ Sci Pollut Res Int       Date:  2020-01-08       Impact factor: 4.223

2.  Developing a QSPR Model of Organic Carbon Normalized Sorption Coefficients of Perfluorinated and Polyfluoroalkyl Substances.

Authors:  Lan Jiang; Yue Xu; Xiaoyu Zhang; Bingfeng Xu; Ximeng Xu; Yixing Ma
Journal:  Molecules       Date:  2022-08-31       Impact factor: 4.927

3.  Identfication of Potent LXRβ-Selective Agonists without LXRα Activation by In Silico Approaches.

Authors:  Meimei Chen; Fafu Yang; Jie Kang; Huijuan Gan; Xuemei Yang; Xinmei Lai; Yuxing Gao
Journal:  Molecules       Date:  2018-06-04       Impact factor: 4.411

  3 in total

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