Literature DB >> 25083870

Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia.

Thomas Trimarchi1, Erhan Bilal2, Panagiotis Ntziachristos1, Giulia Fabbri3, Riccardo Dalla-Favera3, Aristotelis Tsirigos4, Iannis Aifantis5.   

Abstract

Notch signaling is a key developmental pathway that is subject to frequent genetic and epigenetic perturbations in many different human tumors. Here we investigate whether long noncoding RNA (lncRNA) genes, in addition to mRNAs, are key downstream targets of oncogenic Notch1 in human T cell acute lymphoblastic leukemia (T-ALL). By integrating transcriptome profiles with chromatin state maps, we have uncovered many previously unreported T-ALL-specific lncRNA genes, a fraction of which are directly controlled by the Notch1/Rpbjκ activator complex. Finally we have shown that one specific Notch-regulated lncRNA, LUNAR1, is required for efficient T-ALL growth in vitro and in vivo due to its ability to enhance IGF1R mRNA expression and sustain IGF1 signaling. These results confirm that lncRNAs are important downstream targets of the Notch signaling pathway, and additionally they are key regulators of the oncogenic state in T-ALL.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25083870      PMCID: PMC4131209          DOI: 10.1016/j.cell.2014.05.049

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  68 in total

1.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

2.  Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.

Authors:  Ci Chu; Kun Qu; Franklin L Zhong; Steven E Artandi; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-29       Impact factor: 17.970

3.  Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.

Authors:  Alla A Sigova; Alan C Mullen; Benoit Molinie; Sumeet Gupta; David A Orlando; Matthew G Guenther; Albert E Almada; Charles Lin; Phillip A Sharp; Cosmas C Giallourakis; Richard A Young
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

4.  Control of somatic tissue differentiation by the long non-coding RNA TINCR.

Authors:  Markus Kretz; Zurab Siprashvili; Ci Chu; Dan E Webster; Ashley Zehnder; Kun Qu; Carolyn S Lee; Ross J Flockhart; Abigail F Groff; Jennifer Chow; Danielle Johnston; Grace E Kim; Robert C Spitale; Ryan A Flynn; Grace X Y Zheng; Subhadra Aiyer; Arjun Raj; John L Rinn; Howard Y Chang; Paul A Khavari
Journal:  Nature       Date:  2012-12-02       Impact factor: 49.962

5.  Braveheart, a long noncoding RNA required for cardiovascular lineage commitment.

Authors:  Carla A Klattenhoff; Johanna C Scheuermann; Lauren E Surface; Robert K Bradley; Paul A Fields; Matthew L Steinhauser; Huiming Ding; Vincent L Butty; Lillian Torrey; Simon Haas; Ryan Abo; Mohammadsharif Tabebordbar; Richard T Lee; Christopher B Burge; Laurie A Boyer
Journal:  Cell       Date:  2013-01-24       Impact factor: 41.582

6.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

7.  The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus.

Authors:  J Antonio Gomez; Orly L Wapinski; Yul W Yang; Jean-François Bureau; Smita Gopinath; Denise M Monack; Howard Y Chang; Michel Brahic; Karla Kirkegaard
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

8.  Xist RNA is a potent suppressor of hematologic cancer in mice.

Authors:  Eda Yildirim; James E Kirby; Diane E Brown; Francois E Mercier; Ruslan I Sadreyev; David T Scadden; Jeannie T Lee
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

9.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
Journal:  Nature       Date:  2013-06-23       Impact factor: 49.962

10.  Transcriptome analysis by strand-specific sequencing of complementary DNA.

Authors:  Dmitri Parkhomchuk; Tatiana Borodina; Vyacheslav Amstislavskiy; Maria Banaru; Linda Hallen; Sylvia Krobitsch; Hans Lehrach; Alexey Soldatov
Journal:  Nucleic Acids Res       Date:  2009-07-20       Impact factor: 16.971

View more
  221 in total

Review 1.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

2.  Signaling involved in stem cell reprogramming and differentiation.

Authors:  Shihori Tanabe
Journal:  World J Stem Cells       Date:  2015-08-26       Impact factor: 5.326

Review 3.  Architectural and Functional Commonalities between Enhancers and Promoters.

Authors:  Tae-Kyung Kim; Ramin Shiekhattar
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

4.  Endogenous dendritic cells from the tumor microenvironment support T-ALL growth via IGF1R activation.

Authors:  Todd A Triplett; Kim T Cardenas; Jessica N Lancaster; Zicheng Hu; Hilary J Selden; Guadalupe J Jasso; Sadhana Balasubramanyam; Kathy Chan; LiQi Li; Xi Chen; Andrea N Marcogliese; Utpal P Davé; Paul E Love; Lauren I R Ehrlich
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-09       Impact factor: 11.205

Review 5.  Long Noncoding RNAs: At the Intersection of Cancer and Chromatin Biology.

Authors:  Adam M Schmitt; Howard Y Chang
Journal:  Cold Spring Harb Perspect Med       Date:  2017-07-05       Impact factor: 6.915

Review 6.  From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease.

Authors:  Miao Sun; W Lee Kraus
Journal:  Endocr Rev       Date:  2014-11-26       Impact factor: 19.871

7.  Prognostic and Biologic Relevance of Clinically Applicable Long Noncoding RNA Profiling in Older Patients with Cytogenetically Normal Acute Myeloid Leukemia.

Authors:  Ramiro Garzon; Clara D Bloomfield; Dimitrios Papaioannou; Deedra Nicolet; Hatice G Ozer; Krzysztof Mrózek; Stefano Volinia; Paolo Fadda; Andrew J Carroll; Jessica Kohlschmidt; Jonathan E Kolitz; Eunice S Wang; Richard M Stone; John C Byrd
Journal:  Mol Cancer Ther       Date:  2019-06-04       Impact factor: 6.261

Review 8.  Long noncoding RNAs in lipid metabolism.

Authors:  Coen van Solingen; Kaitlyn R Scacalossi; Kathryn J Moore
Journal:  Curr Opin Lipidol       Date:  2018-06       Impact factor: 4.776

9.  RNA Splicing Modulation Selectively Impairs Leukemia Stem Cell Maintenance in Secondary Human AML.

Authors:  Leslie A Crews; Larisa Balaian; Nathaniel P Delos Santos; Heather S Leu; Angela C Court; Elisa Lazzari; Anil Sadarangani; Maria A Zipeto; James J La Clair; Reymundo Villa; Anna Kulidjian; Rainer Storb; Sheldon R Morris; Edward D Ball; Michael D Burkart; Catriona H M Jamieson
Journal:  Cell Stem Cell       Date:  2016-08-25       Impact factor: 24.633

10.  Long noncoding RNA derived from CD244 signaling epigenetically controls CD8+ T-cell immune responses in tuberculosis infection.

Authors:  Yang Wang; Huiling Zhong; Xiaodan Xie; Crystal Y Chen; Dan Huang; Ling Shen; Hui Zhang; Zheng W Chen; Gucheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.