Literature DB >> 25081516

Structural studies of DNA end detection and resection in homologous recombination.

Christian Bernd Schiller1, Florian Ulrich Seifert1, Christian Linke-Winnebeck1, Karl-Peter Hopfner2.   

Abstract

DNA double-strand breaks are repaired by two major pathways, homologous recombination or nonhomologous end joining. The commitment to one or the other pathway proceeds via different steps of resection of the DNA ends, which is controlled and executed by a set of DNA double-strand break sensors, endo- and exonucleases, helicases, and DNA damage response factors. The molecular choreography of the underlying protein machinery is beginning to emerge. In this review, we discuss the early steps of genetic recombination and double-strand break sensing with an emphasis on structural and molecular studies.
Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

Mesh:

Year:  2014        PMID: 25081516      PMCID: PMC4176011          DOI: 10.1101/cshperspect.a017962

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  236 in total

1.  Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae.

Authors:  K Myung; C Chen; R D Kolodner
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

2.  Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.

Authors:  Michael Lisby; Jacqueline H Barlow; Rebecca C Burgess; Rodney Rothstein
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

3.  Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family.

Authors:  Jillian Orans; Elizabeth A McSweeney; Ravi R Iyer; Michael A Hast; Homme W Hellinga; Paul Modrich; Lorena S Beese
Journal:  Cell       Date:  2011-04-15       Impact factor: 41.582

Review 4.  Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes.

Authors:  Young-Hoon Kang; Chul-Hwan Lee; Yeon-Soo Seo
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-04       Impact factor: 8.250

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli.

Authors:  J C Connelly; E S de Leau; E A Okely; D R Leach
Journal:  J Biol Chem       Date:  1997-08-08       Impact factor: 5.157

7.  CtIP protein dimerization is critical for its recruitment to chromosomal DNA double-stranded breaks.

Authors:  Hailong Wang; Zhengping Shao; Linda Z Shi; Patty Yi-Hwa Hwang; Lan N Truong; Michael W Berns; David J Chen; Xiaohua Wu
Journal:  J Biol Chem       Date:  2012-04-27       Impact factor: 5.157

8.  Molecular cloning and characterization of a novel retinoblastoma-binding protein.

Authors:  C Fusco; A Reymond; A S Zervos
Journal:  Genomics       Date:  1998-08-01       Impact factor: 5.736

9.  Molecular characterization of the role of the Schizosaccharomyces pombe nip1+/ctp1+ gene in DNA double-strand break repair in association with the Mre11-Rad50-Nbs1 complex.

Authors:  Yufuko Akamatsu; Yasuto Murayama; Takatomi Yamada; Tomofumi Nakazaki; Yasuhiro Tsutsui; Kunihiro Ohta; Hiroshi Iwasaki
Journal:  Mol Cell Biol       Date:  2008-03-31       Impact factor: 4.272

10.  Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair.

Authors:  Oliver Limbo; Davide Moiani; Aryandi Kertokalio; Claire Wyman; John A Tainer; Paul Russell
Journal:  Nucleic Acids Res       Date:  2012-10-17       Impact factor: 16.971

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  12 in total

1.  Structure of the Rad50 DNA double-strand break repair protein in complex with DNA.

Authors:  Anna Rojowska; Katja Lammens; Florian U Seifert; Carolin Direnberger; Heidi Feldmann; Karl-Peter Hopfner
Journal:  EMBO J       Date:  2014-10-27       Impact factor: 11.598

Review 2.  DNA-pairing and annealing processes in homologous recombination and homology-directed repair.

Authors:  Scott W Morrical
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-02-02       Impact factor: 10.005

3.  Mre11 complex links sister chromatids to promote repair of a collapsed replication fork.

Authors:  Min Zhu; Hongchang Zhao; Oliver Limbo; Paul Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

4.  Structural mechanism of ATP-dependent DNA binding and DNA end bridging by eukaryotic Rad50.

Authors:  Florian Ulrich Seifert; Katja Lammens; Gabriele Stoehr; Brigitte Kessler; Karl-Peter Hopfner
Journal:  EMBO J       Date:  2016-02-19       Impact factor: 11.598

5.  Structure of the catalytic domain of Mre11 from Chaetomium thermophilum.

Authors:  Florian Ulrich Seifert; Katja Lammens; Karl Peter Hopfner
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-22       Impact factor: 1.056

Review 6.  Envisioning the dynamics and flexibility of Mre11-Rad50-Nbs1 complex to decipher its roles in DNA replication and repair.

Authors:  Julien Lafrance-Vanasse; Gareth J Williams; John A Tainer
Journal:  Prog Biophys Mol Biol       Date:  2015-01-07       Impact factor: 3.667

7.  The bacterial Mre11-Rad50 homolog SbcCD cleaves opposing strands of DNA by two chemically distinct nuclease reactions.

Authors:  Jan-Hinnerk Saathoff; Lisa Käshammer; Katja Lammens; Robert Thomas Byrne; Karl-Peter Hopfner
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

8.  Genetic and biochemical evidences reveal novel insights into the mechanism underlying Saccharomyces cerevisiae Sae2-mediated abrogation of DNA replication stress.

Authors:  Indrajeet Ghodke; K Muniyappa
Journal:  J Biosci       Date:  2016-12       Impact factor: 1.826

Review 9.  An Overview of the Molecular Mechanisms of Recombinational DNA Repair.

Authors:  Stephen C Kowalczykowski
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-11-02       Impact factor: 10.005

10.  Chromosomal Translocations in the Parasite Leishmania by a MRE11/RAD50-Independent Microhomology-Mediated End Joining Mechanism.

Authors:  Marie-Claude N Laffitte; Philippe Leprohon; Maripier Hainse; Danielle Légaré; Jean-Yves Masson; Marc Ouellette
Journal:  PLoS Genet       Date:  2016-06-17       Impact factor: 5.917

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