Literature DB >> 25081138

Photo-stability of peptide-bond aggregates: N-methylformamide dimers.

Rachel Crespo-Otero1, Artur Mardykov, Elsa Sanchez-Garcia, Wolfram Sander, Mario Barbatti.   

Abstract

The formation of weakly-bound dimers of N-methylformamide (NMF) and the photochemistry of these dimers after irradiation at 248 nm were explored using matrix-isolation spectroscopy. Calculations were used to characterize the diverse isomers and assign their IR spectra; non-adiabatic dynamics was simulated to understand their photo-deactivation mechanism. The most stable dimers, and , were obtained by trans-trans aggregation (N-HO[double bond, length as m-dash]C interactions) and could be identified in the matrix. The main products formed after irradiation are the trans-cis dimers ( and ), also stabilized by N-HO[double bond, length as m-dash]C interactions. In contrast to the photochemistry of the monomers, no dissociative products were observed after 248 nm irradiation of the dimers. The absence of dissociative products can be explained by a proton-transfer mechanism in the excited state that is faster than the photo-dissociative mechanism. The fact that hydrogen bonding has such a significant effect on the photochemical stability of NMF has important implications to understand the stability of peptide-bonded systems to UV irradiation.

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Year:  2014        PMID: 25081138     DOI: 10.1039/c4cp02518k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  2 in total

1.  Intersystem crossing-branched excited-state intramolecular proton transfer for o-nitrophenol: An ab initio on-the-fly nonadiabatic molecular dynamic simulation.

Authors:  Chao Xu; Le Yu; Chaoyuan Zhu; Jianguo Yu; Zexing Cao
Journal:  Sci Rep       Date:  2016-05-25       Impact factor: 4.379

2.  fromage: A library for the study of molecular crystal excited states at the aggregate scale.

Authors:  Miguel Rivera; Michael Dommett; Amir Sidat; Warda Rahim; Rachel Crespo-Otero
Journal:  J Comput Chem       Date:  2020-01-07       Impact factor: 3.376

  2 in total

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