Literature DB >> 2508086

A protein structural motif that bends DNA.

S W White1, K Appelt, K S Wilson, I Tanaka.   

Abstract

The prokaryotic protein HU, integration host factor (IHF) from Escherichia coli, and transcription factor 1 (TF1) from bacteriophage SPO1 are closely related molecules. Biochemical results suggest that the role of these proteins is to bind and bend DNA. From the high-resolution structure of HU, we propose a model for this interaction with DNA. Crucial amino acid differences between the proteins can be rationalized in terms of their different specific functions.

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Year:  1989        PMID： 2508086     DOI： 10.1002/prot.340050405

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


  40 in total

1.  Selective association of protein molecules followed by mass spectrometry.

Authors:  H Vis; C M Dobson; C V Robinson
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

2.  Nonspecific DNA binding and bending by HUαβ: interfaces of the three binding modes characterized by salt-dependent thermodynamics.

Authors:  Junseock Koh; Irina Shkel; Ruth M Saecker; M Thomas Record
Journal:  J Mol Biol       Date:  2011-04-12       Impact factor: 5.469

3.  Flexible DNA bending in HU-DNA cocrystal structures.

Authors:  Kerren K Swinger; Kathryn M Lemberg; Ying Zhang; Phoebe A Rice
Journal:  EMBO J       Date:  2003-07-15       Impact factor: 11.598

4.  The HU-DNA binding interaction probed with UV resonance Raman spectroscopy: structural elements of specificity.

Authors:  Kristi Wojtuszewski; Ishita Mukerji
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

5.  The structural basis of African swine fever virus pA104R binding to DNA and its inhibition by stilbene derivatives.

Authors:  Ruili Liu; Yeping Sun; Yan Chai; Su Li; Shihua Li; Liang Wang; Jiaqi Su; Shaoxiong Yu; Jinghua Yan; Feng Gao; Gaiping Zhang; Hua-Ji Qiu; George F Gao; Jianxun Qi; Han Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-01       Impact factor: 11.205

6.  Determination of the DNA-interacting region of the archaebacterial chromosomal protein MC1. Photocrosslinks with 5-bromouracil-substituted DNA.

Authors:  M Katouzian-Safadi; B Laine; F Chartier; J Y Cremet; D Belaiche; P Sautiere; M Charlier
Journal:  Nucleic Acids Res       Date:  1991-09-25       Impact factor: 16.971

Review 7.  Structural aspects of protein-DNA recognition.

Authors:  P S Freemont; A N Lane; M R Sanderson
Journal:  Biochem J       Date:  1991-08-15       Impact factor: 3.857

8.  Coactivation in vitro of the sigma54-dependent promoter Pu of the TOL plasmid of Pseudomonas putida by HU and the mammalian HMG-1 protein.

Authors:  J Pérez-Martín; V De Lorenzo
Journal:  J Bacteriol       Date:  1997-04       Impact factor: 3.490

9.  Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy.

Authors:  Doinita Serban; Sandra F Arcineigas; Constantinos E Vorgias; George J Thomas
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

10.  The stability of the archaeal HU histone-like DNA-binding protein from Thermoplasma volcanium.

Authors:  Fotini Orfaniotou; Pavlos Tzamalis; Angelos Thanassoulas; Eleni Stefanidi; Athanassios Zees; Effrosini Boutou; Metaxia Vlassi; George Nounesis; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2008-09-26       Impact factor: 2.395
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