Literature DB >> 25080019

Double GC:GC mismatch in dsDNA enhances local dynamics retaining the DNA footprint: a high-resolution NMR study.

Anirban Ghosh1, Rajiv Kumar Kar, Janarthanan Krishnamoorthy, Subhrangsu Chatterjee, Anirban Bhunia.   

Abstract

Mutations in the genome are responsible for several fatal genetic disorders. The default DNA repair mechanism restores the malfunction of the gene caused by mutation to maintain functional regularity and sequential integrity of the cell. Here, we have elucidated the NMR structure and the dynamics of GC mismatched DNA (PDB code: 2MJX) and found that the mismatched DNA still retains the typical B-type helical form, but in the process introduces backbone distortion resulting from frame-shifted base pairs.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; duplex DNA; dynamics; mismatch DNA; molecular dynamics simulation

Mesh:

Substances:

Year:  2014        PMID: 25080019     DOI: 10.1002/cmdc.201402238

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  9 in total

1.  Self-assembly of a nine-residue amyloid-forming peptide fragment of SARS corona virus E-protein: mechanism of self aggregation and amyloid-inhibition of hIAPP.

Authors:  Anirban Ghosh; Amit S Pithadia; Jyotsna Bhat; Supriyo Bera; Anupam Midya; Carol A Fierke; Ayyalusamy Ramamoorthy; Anirban Bhunia
Journal:  Biochemistry       Date:  2015-03-24       Impact factor: 3.162

2.  Mode of Action of a Designed Antimicrobial Peptide: High Potency against Cryptococcus neoformans.

Authors:  Aritreyee Datta; Vikas Yadav; Anirban Ghosh; Jaesun Choi; Dipita Bhattacharyya; Rajiv K Kar; Humaira Ilyas; Arkajyoti Dutta; Eunseol An; Jayanta Mukhopadhyay; Dongkuk Lee; Kaustuv Sanyal; Ayyalusamy Ramamoorthy; Anirban Bhunia
Journal:  Biophys J       Date:  2016-10-18       Impact factor: 4.033

3.  "Flexible hinge" dynamics in mismatched DNA revealed by fluorescence correlation spectroscopy.

Authors:  Timour B Ten; Viktoriya Zvoda; Manas K Sarangi; Serguei V Kuznetsov; Anjum Ansari
Journal:  J Biol Phys       Date:  2022-04-22       Impact factor: 1.560

4.  Biophysical Characterization of Essential Phosphorylation at the Flexible C-Terminal Region of C-Raf with 14-3-3ζ Protein.

Authors:  Anirban Ghosh; Bhisma Narayan Ratha; Nilanjan Gayen; Kamal H Mroue; Rajiv K Kar; Atin K Mandal; Anirban Bhunia
Journal:  PLoS One       Date:  2015-08-21       Impact factor: 3.240

Review 5.  A survey of recent unusual high-resolution DNA structures provoked by mismatches, repeats and ligand binding.

Authors:  Roshan Satange; Chung-Ke Chang; Ming-Hon Hou
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

6.  In Silico Screening and Binding Characterization of Small Molecules toward a G-Quadruplex Structure Formed in the Promoter Region of c-MYC Oncogene.

Authors:  Jyotsna Bhat; Soma Mondal; Pallabi Sengupta; Subhrangsu Chatterjee
Journal:  ACS Omega       Date:  2017-08-09

7.  Structural insights of a self-assembling 9-residue peptide from the C-terminal tail of the SARS corona virus E-protein in DPC and SDS micelles: A combined high and low resolution spectroscopic study.

Authors:  Anirban Ghosh; Dipita Bhattacharyya; Anirban Bhunia
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-10-14       Impact factor: 3.747

8.  The Research of G-Motif Construction and Chirality in Deoxyguanosine Monophosphate Nucleotide Complexes.

Authors:  Yanhong Zhu; Zhongkui Li; Pengfei Wang; Qi-Ming Qiu; Hongwei Ma; Hui Li
Journal:  Front Chem       Date:  2021-06-30       Impact factor: 5.221

9.  Melting temperature measurement and mesoscopic evaluation of single, double and triple DNA mismatches.

Authors:  Luciana M Oliveira; Adam S Long; Tom Brown; Keith R Fox; Gerald Weber
Journal:  Chem Sci       Date:  2020-07-23       Impact factor: 9.825

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.