Literature DB >> 25078986

Defining suitable reference genes for RT-qPCR analysis on human sertoli cells after 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure.

Mariana Antunes Ribeiro1, Mariana Bisarro dos Reis, Leonardo Nazário de Moraes, Christine Briton-Jones, Cláudia Aparecida Rainho, Wellerson Rodrigo Scarano.   

Abstract

Quantitative real-time RT-PCR (qPCR) has proven to be a valuable molecular technique to quantify gene expression. There are few studies in the literature that describe suitable reference genes to normalize gene expression data. Studies of transcriptionally disruptive toxins, like tetrachlorodibenzo-p-dioxin (TCDD), require careful consideration of reference genes. The present study was designed to validate potential reference genes in human Sertoli cells after exposure to TCDD. 32 candidate reference genes were analyzed to determine their applicability. geNorm and NormFinder softwares were used to obtain an estimation of the expression stability of the 32 genes and to identify the most suitable genes for qPCR data normalization.

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Year:  2014        PMID: 25078986     DOI: 10.1007/s11033-014-3637-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  14 in total

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Authors:  Stephen A Bustin; Vladimir Benes; Jeremy A Garson; Jan Hellemans; Jim Huggett; Mikael Kubista; Reinhold Mueller; Tania Nolan; Michael W Pfaffl; Gregory L Shipley; Jo Vandesompele; Carl T Wittwer
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

2.  Quantification of human telomerase RNA (hTR) and human telomerase reverse transcriptase (hTERT) mRNA in testicular tissue of infertile patients.

Authors:  M Schrader; M Müller; R Heicappell; B Straub; K Miller
Journal:  Asian J Androl       Date:  2001-12       Impact factor: 3.285

3.  Sertoli cell-conditioned medium induces germ cell differentiation in human embryonic stem cells.

Authors:  Mieke Geens; Karen Dora Sermon; Hilde Van de Velde; Herman Tournaye
Journal:  J Assist Reprod Genet       Date:  2011-02-12       Impact factor: 3.412

4.  Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays.

Authors:  T Mosmann
Journal:  J Immunol Methods       Date:  1983-12-16       Impact factor: 2.303

Review 5.  Dioxins: an overview.

Authors:  Arnold Schecter; Linda Birnbaum; John J Ryan; John D Constable
Journal:  Environ Res       Date:  2006-01-30       Impact factor: 6.498

6.  beta-Actin and GAPDH housekeeping gene expression in asthmatic airways is variable and not suitable for normalising mRNA levels.

Authors:  E M Glare; M Divjak; M J Bailey; E H Walters
Journal:  Thorax       Date:  2002-09       Impact factor: 9.139

7.  Sertoli cells from non-obstructive azoospermia and obstructive azoospermia patients show distinct morphology, Raman spectrum and biochemical phenotype.

Authors:  Meng Ma; Shi Yang; Zhenzhen Zhang; Peng Li; Yuehua Gong; Linhong Liu; Yong Zhu; Ruhui Tian; Yufei Liu; Xiaobo Wang; Feng Liu; Lin He; Yang Liu; Hao Yang; Zheng Li; Zuping He
Journal:  Hum Reprod       Date:  2013-03-15       Impact factor: 6.918

8.  Claudin-11 is over-expressed and dislocated from the blood-testis barrier in Sertoli cells associated with testicular intraepithelial neoplasia in men.

Authors:  Cornelia Fink; Roswitha Weigel; Ludger Fink; Jochen Wilhelm; Sabine Kliesch; Martina Zeiler; Martin Bergmann; Ralph Brehm
Journal:  Histochem Cell Biol       Date:  2009-02-25       Impact factor: 4.304

9.  Differential expression of GAPDH and beta3-actin in growing collateral arteries.

Authors:  Elisabeth Deindl; Kerstin Boengler; Niels van Royen; Wolfgang Schaper
Journal:  Mol Cell Biochem       Date:  2002-07       Impact factor: 3.396

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  3 in total

1.  Identification of suitable reference genes for real-time quantitative PCR analysis of hydrogen peroxide-treated human umbilical vein endothelial cells.

Authors:  Tianyi Li; Hongying Diao; Lei Zhao; Yue Xing; Jichang Zhang; Ning Liu; Youyou Yan; Xin Tian; Wei Sun; Bin Liu
Journal:  BMC Mol Biol       Date:  2017-04-05       Impact factor: 2.946

Review 2.  With Reference to Reference Genes: A Systematic Review of Endogenous Controls in Gene Expression Studies.

Authors:  Joanne R Chapman; Jonas Waldenström
Journal:  PLoS One       Date:  2015-11-10       Impact factor: 3.240

3.  Validation of Housekeeping Genes as Reference for Reverse-Transcription-qPCR Analysis in Busulfan-Injured Microvascular Endothelial Cells.

Authors:  Wen Ju; Alhaji Osman Smith; Tiantian Sun; Pingping Zhao; Yan Jiang; Lu Liu; Ting Zhang; Kunming Qi; Jianlin Qiao; Kailin Xu; Lingyu Zeng
Journal:  Biomed Res Int       Date:  2018-10-02       Impact factor: 3.411

  3 in total

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