Literature DB >> 25078622

Integrative genomics of chronic obstructive pulmonary disease.

Brian D Hobbs1, Craig P Hersh2.   

Abstract

Chronic obstructive pulmonary disease (COPD) is a complex disease with both environmental and genetic determinants, the most important of which is cigarette smoking. There is marked heterogeneity in the development of COPD among persons with similar cigarette smoking histories, which is likely partially explained by genetic variation. Genomic approaches such as genomewide association studies and gene expression studies have been used to discover genes and molecular pathways involved in COPD pathogenesis; however, these "first generation" omics studies have limitations. Integrative genomic studies are emerging which can combine genomic datasets to further examine the molecular underpinnings of COPD. Future research in COPD genetics will likely use network-based approaches to integrate multiple genomic data types in order to model the complex molecular interactions involved in COPD pathogenesis. This article reviews the genomic research to date and offers a vision for the future of integrative genomic research in COPD.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chronic obstructive pulmonary disease; Genomewide association study; Genomics; Network medicine

Mesh:

Substances:

Year:  2014        PMID: 25078622      PMCID: PMC4172635          DOI: 10.1016/j.bbrc.2014.07.086

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  120 in total

1.  Variability in small airway epithelial gene expression among normal smokers.

Authors:  Zeinab Ammous; Neil R Hackett; Marcus W Butler; Tina Raman; Igor Dolgalev; Timothy P O'Connor; Ben-Gary Harvey; Ronald G Crystal
Journal:  Chest       Date:  2008-03-13       Impact factor: 9.410

Review 2.  Biomarkers in COPD.

Authors:  Alvar Agusti; Don D Sin
Journal:  Clin Chest Med       Date:  2013-12-12       Impact factor: 2.878

3.  Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study.

Authors:  Ani Manichaikul; Eric A Hoffman; Joanna Smolonska; Wei Gao; Michael H Cho; Heather Baumhauer; Matthew Budoff; John H M Austin; George R Washko; J Jeffrey Carr; Joel D Kaufman; Tess Pottinger; Charles A Powell; Cisca Wijmenga; Pieter Zanen; Harry J M Groen; Dirkje S Postma; Adam Wanner; Farshid N Rouhani; Mark L Brantly; Rhea Powell; Benjamin M Smith; Dan Rabinowitz; Leslie J Raffel; Karen D Hinckley Stukovsky; James D Crapo; Terri H Beaty; John E Hokanson; Edwin K Silverman; Josée Dupuis; George T O'Connor; H Marike Boezen; Stephen S Rich; R Graham Barr
Journal:  Am J Respir Crit Care Med       Date:  2014-02-15       Impact factor: 21.405

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome.

Authors:  Emily S Wan; Weiliang Qiu; Andrea Baccarelli; Vincent J Carey; Helene Bacherman; Stephen I Rennard; Alvar Agusti; Wayne Anderson; David A Lomas; Dawn L Demeo
Journal:  Hum Mol Genet       Date:  2012-04-06       Impact factor: 6.150

6.  Genome-wide meta-analyses identify multiple loci associated with smoking behavior.

Authors: 
Journal:  Nat Genet       Date:  2010-04-25       Impact factor: 38.330

7.  The clinical and genetic features of COPD-asthma overlap syndrome.

Authors:  Megan Hardin; Michael Cho; Merry-Lynn McDonald; Terri Beaty; Joe Ramsdell; Surya Bhatt; Edwin J R van Beek; Barry J Make; James D Crapo; Edwin K Silverman; Craig P Hersh
Journal:  Eur Respir J       Date:  2014-05-29       Impact factor: 16.671

8.  Regulation of Wnt4 in chronic obstructive pulmonary disease.

Authors:  Andrew L Durham; Alistair McLaren; Brian P Hayes; Gaetano Caramori; Chris L Clayton; Peter J Barnes; K Fan Chung; Ian M Adcock
Journal:  FASEB J       Date:  2013-03-05       Impact factor: 5.191

9.  Susceptibility to chronic mucus hypersecretion, a genome wide association study.

Authors:  Akkelies E Dijkstra; Joanna Smolonska; Maarten van den Berge; Ciska Wijmenga; Pieter Zanen; Marjan A Luinge; Mathieu Platteel; Jan-Willem Lammers; Magnus Dahlback; Kerrie Tosh; Pieter S Hiemstra; Peter J Sterk; Avi Spira; Jorgen Vestbo; Borge G Nordestgaard; Marianne Benn; Sune F Nielsen; Morten Dahl; W Monique Verschuren; H Susan J Picavet; Henriette A Smit; Michael Owsijewitsch; Hans U Kauczor; Harry J de Koning; Eva Nizankowska-Mogilnicka; Filip Mejza; Pawel Nastalek; Cleo C van Diemen; Michael H Cho; Edwin K Silverman; James D Crapo; Terri H Beaty; David A Lomas; Per Bakke; Amund Gulsvik; Yohan Bossé; Ma'en Obeidat; M A Obeidat; Daan W Loth; Lies Lahousse; Fernando Rivadeneira; Andre G Uitterlinden; Andre Hofman; Bruno H Stricker; Guy G Brusselle; Cornelia M van Duijn; Uilke Brouwer; Gerard H Koppelman; Judith M Vonk; Martijn C Nawijn; Harry J M Groen; Wim Timens; H Marike Boezen; Dirkje S Postma
Journal:  PLoS One       Date:  2014-04-08       Impact factor: 3.240

10.  Smoking dysregulates the human airway basal cell transcriptome at COPD risk locus 19q13.2.

Authors:  Dorothy M Ryan; Thomas L Vincent; Jacqueline Salit; Matthew S Walters; Francisco Agosto-Perez; Renat Shaykhiev; Yael Strulovici-Barel; Robert J Downey; Lauren J Buro-Auriemma; Michelle R Staudt; Neil R Hackett; Jason G Mezey; Ronald G Crystal
Journal:  PLoS One       Date:  2014-02-03       Impact factor: 3.240

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  20 in total

1.  IL-33 induces production of autoantibody against autologous respiratory epithelial cells: a potential mechanism for the pathogenesis of COPD.

Authors:  Qin Li; Yue Hu; Yan Chen; Zhe Lv; Jingjing Wang; Gao An; Xiaonan Du; Huating Wang; Chris J Corrigan; Wei Wang; Sun Ying
Journal:  Immunology       Date:  2019-03-27       Impact factor: 7.397

Review 2.  Pharmacogenomics of chronic obstructive pulmonary disease.

Authors:  Craig P Hersh
Journal:  Expert Rev Respir Med       Date:  2019-04-08       Impact factor: 3.772

Review 3.  Genetic Determinants in Airways Obstructive Diseases: The Case of Asthma Chronic Obstructive Pulmonary Disease Overlap.

Authors:  Aabida Saferali; Craig P Hersh
Journal:  Immunol Allergy Clin North Am       Date:  2022-06-30       Impact factor: 3.152

4.  COPD subtypes identified by network-based clustering of blood gene expression.

Authors:  Yale Chang; Kimberly Glass; Yang-Yu Liu; Edwin K Silverman; James D Crapo; Ruth Tal-Singer; Russ Bowler; Jennifer Dy; Michael Cho; Peter Castaldi
Journal:  Genomics       Date:  2016-01-08       Impact factor: 5.736

Review 5.  Protein Biomarkers for COPD Outcomes.

Authors:  Karina A Serban; Katherine A Pratte; Russell P Bowler
Journal:  Chest       Date:  2021-01-09       Impact factor: 10.262

Review 6.  Novel aspects of pathogenesis and regeneration mechanisms in COPD.

Authors:  Edvardas Bagdonas; Jovile Raudoniute; Ieva Bruzauskaite; Ruta Aldonyte
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2015-06-02

Review 7.  COPD immunopathology.

Authors:  Gaetano Caramori; Paolo Casolari; Adam Barczyk; Andrew L Durham; Antonino Di Stefano; Ian Adcock
Journal:  Semin Immunopathol       Date:  2016-05-13       Impact factor: 9.623

8.  Gene and miRNA expression profiles in PBMCs from patients with severe and mild emphysema and PiZZ alpha1-antitrypsin deficiency.

Authors:  Cristina Esquinas; Sabina Janciauskiene; Ricardo Gonzalo; Gemma Mas de Xaxars; Beata Olejnicka; Irene Belmonte; Miriam Barrecheguren; Esther Rodriguez; Alexa Nuñez; Francisco Rodriguez-Frias; Marc Miravitlles
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2017-11-29

9.  Blood RNA sequencing shows overlapping gene expression across COPD phenotype domains.

Authors:  Auyon J Ghosh; Aabida Saferali; Sool Lee; Robert Chase; Matthew Moll; Jarrett Morrow; Jeong Yun; Peter J Castaldi; Craig P Hersh
Journal:  Thorax       Date:  2021-06-24       Impact factor: 9.139

10.  Association of MicroRNA-196a2 Variant with Response to Short-Acting β2-Agonist in COPD: An Egyptian Pilot Study.

Authors:  Manal S Fawzy; Mohammad H Hussein; Eman Z Abdelaziz; Hussain A Yamany; Hussein M Ismail; Eman A Toraih
Journal:  PLoS One       Date:  2016-04-04       Impact factor: 3.240

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