Literature DB >> 25077514

Unsorted homology within locus and species trees.

Diego Mallo1, Leonardo De Oliveira Martins2, David Posada2.   

Abstract

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Year:  2014        PMID： 25077514      PMCID： PMC5221733          DOI： 10.1093/sysbio/syu050

Source DB:  PubMed          Journal:  Syst Biol        ISSN： 1063-5157            Impact factor:   15.683


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  15 in total

Review 1.  Homology a personal view on some of the problems.

Authors:  W M Fitch
Journal:  Trends Genet       Date:  2000-05       Impact factor: 11.639

2.  Unified modeling of gene duplication, loss, and coalescence using a locus tree.

Authors:  Matthew D Rasmussen; Manolis Kellis
Journal:  Genome Res       Date:  2012-01-23       Impact factor: 9.043

Review 3.  Phylogenomics: the beginning of incongruence?

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4.  Is a new and general theory of molecular systematics emerging?

Authors:  Scott V Edwards
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5.  Hemiplasy: a new term in the lexicon of phylogenetics.

Authors:  John C Avise; Terence J Robinson
Journal:  Syst Biol       Date:  2008-06       Impact factor: 15.683

6.  From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem.

Authors:  R D Page; M A Charleston
Journal:  Mol Phylogenet Evol       Date:  1997-04       Impact factor: 4.286

7.  Inferring ancient divergences requires genes with strong phylogenetic signals.

Authors:  Leonidas Salichos; Antonis Rokas
Journal:  Nature       Date:  2013-05-08       Impact factor: 49.962

8.  Gene genealogy in three related populations: consistency probability between gene and population trees.

Authors:  N Takahata
Journal:  Genetics       Date:  1989-08       Impact factor: 4.562

9.  Relationships between gene trees and species trees.

Authors:  P Pamilo; M Nei
Journal:  Mol Biol Evol       Date:  1988-09       Impact factor: 16.240

Review 10.  Functional and evolutionary implications of gene orthology.

Authors:  Toni Gabaldón; Eugene V Koonin
Journal:  Nat Rev Genet       Date:  2013-04-04       Impact factor: 53.242
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  3 in total

1.  Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios.

Authors:  Arong Luo; Cheng Ling; Simon Y W Ho; Chao-Dong Zhu
Journal:  Syst Biol       Date:  2018-09-01       Impact factor: 15.683

2.  SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees.

Authors:  Diego Mallo; Leonardo De Oliveira Martins; David Posada
Journal:  Syst Biol       Date:  2015-11-01       Impact factor: 15.683

3.  RecPhyloXML: a format for reconciled gene trees.

Authors:  Wandrille Duchemin; Guillaume Gence; Anne-Muriel Arigon Chifolleau; Lars Arvestad; Mukul S Bansal; Vincent Berry; Bastien Boussau; François Chevenet; Nicolas Comte; Adrián A Davín; Christophe Dessimoz; David Dylus; Damir Hasic; Diego Mallo; Rémi Planel; David Posada; Celine Scornavacca; Gergely Szöllosi; Louxin Zhang; Éric Tannier; Vincent Daubin
Journal:  Bioinformatics       Date:  2018-11-01       Impact factor: 6.937
  3 in total

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