Literature DB >> 25076864

Design and implementation of an FPGA-based timing pulse programmer for pulsed-electron paramagnetic resonance applications.

Li Sun1, Joshua J Savory1, Kurt Warncke1.   

Abstract

The design, construction and implementation of a field-programmable gate array (FPGA) -based pulse programmer for pulsed-electron paramagnetic resonance (EPR) experiments is described. The FPGA pulse programmer offers advantages in design flexibility and cost over previous pulse programmers, that are based on commercial digital delay generators, logic pattern generators, and application-specific integrated circuit (ASIC) designs. The FPGA pulse progammer features a novel transition-based algorithm and command protocol, that is optimized for the timing structure required for most pulsed magnetic resonance experiments. The algorithm was implemented by using a Spartan-6 FPGA (Xilinx), which provides an easily accessible and cost effective solution for FPGA interfacing. An auxiliary board was designed for the FPGA-instrument interface, which buffers the FPGA outputs for increased power consumption and capacitive load requirements. Device specifications include: Nanosecond pulse formation (transition edge rise/fall times, ≤3 ns), low jitter (≤150 ps), large number of channels (16 implemented; 48 available), and long pulse duration (no limit). The hardware and software for the device were designed for facile reconfiguration to match user experimental requirements and constraints. Operation of the device is demonstrated and benchmarked by applications to 1-D electron spin echo envelope modulation (ESEEM) and 2-D hyperfine sublevel correlation (HYSCORE) experiments. The FPGA approach is transferrable to applications in nuclear magnetic resonance (NMR; magnetic resonance imaging, MRI), and to pulse perturbation and detection bandwidths in spectroscopies up through the optical range.

Entities:  

Keywords:  EPR spectroscopy; FPGA; magnetic resonance; pulse programmer; pulsed EPR

Year:  2013        PMID: 25076864      PMCID: PMC4112105          DOI: 10.1002/cmr.b.21240

Source DB:  PubMed          Journal:  Concepts Magn Reson Part B Magn Reson Eng        ISSN: 1552-5031            Impact factor:   1.176


  7 in total

1.  Interaction of the substrate radical and the 5'-deoxyadenosine-5'-methyl group in vitamin B(12) coenzyme-dependent ethanolamine deaminase.

Authors:  K Warncke; A S Utada
Journal:  J Am Chem Soc       Date:  2001-09-05       Impact factor: 15.419

2.  Engineering metal ion coordination to regulate amyloid fibril assembly and toxicity.

Authors:  Jijun Dong; Jeffrey M Canfield; Anil K Mehta; Jacob E Shokes; Bo Tian; W Seth Childers; James A Simmons; Zixu Mao; Robert A Scott; Kurt Warncke; David G Lynn
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-08       Impact factor: 11.205

3.  Identification of dimethylbenzimidazole axial coordination and characterization of (14)N superhyperfine and nuclear quadrupole coupling in Cob(II)alamin bound to ethanolamine deaminase in a catalytically-engaged substrate radical-Cobalt(II) biradical state.

Authors:  S C Ke; M Torrent; D G Museav; K Morokuma; K Warncke
Journal:  Biochemistry       Date:  1999-09-28       Impact factor: 3.162

4.  Active site reactant center geometry in the Co(II)-product radical pair state of coenzyme B12-dependent ethanolamine deaminase determined by using orientation-selection electron spin-echo envelope modulation spectroscopy.

Authors:  Jeffrey M Canfield; Kurt Warncke
Journal:  J Phys Chem B       Date:  2005-02-24       Impact factor: 2.991

5.  Local structure and global patterning of Cu2+ binding in fibrillar amyloid-β [Aβ(1-40)] protein.

Authors:  William A Gunderson; Jessica Hernández-Guzmán; Jesse W Karr; Li Sun; Veronika A Szalai; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2012-10-24       Impact factor: 15.419

6.  Critical role of arginine 160 of the EutB protein subunit for active site structure and radical catalysis in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Li Sun; Olivia A Groover; Jeffrey M Canfield; Kurt Warncke
Journal:  Biochemistry       Date:  2008-04-30       Impact factor: 3.162

7.  OPTESIM, a versatile toolbox for numerical simulation of electron spin echo envelope modulation (ESEEM) that features hybrid optimization and statistical assessment of parameters.

Authors:  Li Sun; Jessica Hernandez-Guzman; Kurt Warncke
Journal:  J Magn Reson       Date:  2009-05-29       Impact factor: 2.229

  7 in total
  1 in total

1.  Active cancellation - A means to zero dead-time pulse EPR.

Authors:  John M Franck; Ryan P Barnes; Timothy J Keller; Thomas Kaufmann; Songi Han
Journal:  J Magn Reson       Date:  2015-07-17       Impact factor: 2.229

  1 in total

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