Literature DB >> 25075916

The Goodwin model revisited: Hopf bifurcation, limit-cycle, and periodic entrainment.

Aurore Woller1, Didier Gonze, Thomas Erneux.   

Abstract

The three-variable Goodwin oscillator is a minimal model demonstrating the emergence of oscillations in simple biochemical feedback systems. As a prototypical oscillator, this model was extensively studied from a theoretical point of view and applied to various biological systems, including circadian clocks. Here, we reexamine this model, derive analytically the amplitude equation near the Hopf bifurcation and investigate the effect of a periodic modulation of the oscillator. In particular, we compare the entrainment performance when the free oscillator displays either self-sustained or damped oscillations. We discuss the results in the context of circadian oscillators.

Mesh:

Year:  2014        PMID: 25075916     DOI: 10.1088/1478-3975/11/4/045002

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  9 in total

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2.  Biophysical clocks face a trade-off between internal and external noise resistance.

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Journal:  Elife       Date:  2018-07-10       Impact factor: 8.140

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5.  Parameter-less approaches for interpreting dynamic cellular response.

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Journal:  J Biol Eng       Date:  2014-08-19       Impact factor: 4.355

Review 6.  Systems Biology-Derived Discoveries of Intrinsic Clocks.

Authors:  Arthur Millius; Hiroki R Ueda
Journal:  Front Neurol       Date:  2017-02-06       Impact factor: 4.003

7.  Collective Oscillations in Coupled-Cell Systems.

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Journal:  Bull Math Biol       Date:  2021-04-23       Impact factor: 1.758

8.  Unstable eigenvectors and reduced amplitude spaces specifying limit cycles of coupled oscillators with simultaneously diagonalizable matrices: with applications from electric circuits to gene regulation.

Authors:  S Mongkolsakulvong; T D Frank
Journal:  Eur Phys J B       Date:  2022-09-19       Impact factor: 1.398

9.  A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light.

Authors:  Vojtěch Kumpošt; Daniela Vallone; Srinivas Babu Gondi; Nicholas S Foulkes; Ralf Mikut; Lennart Hilbert
Journal:  Sci Rep       Date:  2021-07-14       Impact factor: 4.379

  9 in total

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