| Literature DB >> 25072505 |
Xuanfu Xu1, Bin Su2, Chuangao Xie3, Shumei Wei3, Yingqun Zhou1, Hua Liu1, Weiqi Dai1, Ping Cheng1, Fan Wang1, Xiaorong Xu1, Chuanyong Guo1.
Abstract
AIMS: The hedgehog signaling pathway plays an important role in EMT of pancreatic cancer cells, but the precise mechanisms remain elusive. Because S100A4 as a key EMT moleculer marker was found to be upregulated upon Gli1 in pancreatic cancer cells, we focused on the relationship between Shh-Gli1 signals and S100 genes family.Entities:
Mesh:
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Year: 2014 PMID: 25072505 PMCID: PMC4114558 DOI: 10.1371/journal.pone.0096441
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
The primer sequences for real time RT-PCR assays.
| Gene | primer sequences |
| Gli1 | F: |
| R: | |
| Shh | F: |
| R: | |
| Patched1 |
|
|
| |
| GAPDH | F: |
| R: | |
| E-cadherin | F: |
| R: | |
| Vimentin | F: |
| R: | |
| S100A2 | F: |
| R: | |
| S100A4 | F: |
| R: | |
| S100A6 | F: |
| R: | |
| S100A10 | F: |
| R: | |
| S100A11 | F: |
| R: | |
| S100A13 | F: |
| R: | |
| S100A14 | F: |
| R: | |
| S100A16 | F: |
| R: | |
| S100P | F: |
| R: | |
| TCHH | F: |
| R: |
The primers for XChIP assays.
| Gene | primer sequences |
| S100A4 | F: |
| R: | |
| S100A6 | F: |
| R: | |
| S100A2 | F: |
| R: | |
| GAPDH | F: |
| F: |
Figure 1Expression of the S100 gene family.
A: cDNA microarray data about S100 gene family; B: The differential expression levels of partial members of S100 gene family by qRT-PCR. The expression of GAPDH is as a control. * P<0.05, ** P<0.01.
The putative Gli1 biding sites in S100A gene family.
| Gene | Site | Sequence | Homology |
| S100A1 | 350∼358 | ATGGTGGGT | 89% |
| 1415∼1423 | CTGGTGGGT* | 100% | |
| 1780∼1788 | GGGGTGGTC | 89% | |
| S100A2 | −4932∼−4940 | TGGGTGGTA | 89% |
| −3703∼−3711 | ACCCCCCAG | 89% | |
| −3323∼−3331 | TGGGTGGGC | 89% | |
| −2870∼−2878 | AGCCACCAG | 89% | |
| −2366∼−2374 | CTGGGGGGT | 89% | |
| 64∼72 | TGGGTGGGC | 89% | |
| 326∼334 | CTGGTGAGT | 89% | |
| 418∼426 | CTGGTGGGA | 89% | |
| S100A3 | −4900∼−4908 | ACCCTCCAG | 89% |
| −3205∼−3213 | GACCACCCA* | 100% | |
| −1567∼−1575 | ACCCACAAG | 89% | |
| 491∼499 | TGGGTGGTG | 89% | |
| S100A4 | −349∼−357 | ACCCACCAC | 89% |
| −227∼−235 | TGGGTGGTG | 89% | |
| 126∼134 | CTGGTGGGG | 89% | |
| S100A5 | −947∼−955 | GTGGTGGGT | 89% |
| 424∼432 | CTGGTGGGT* | 100% | |
| S100A6 | −246∼−254 | CTGGTGGGG | 89% |
| 786∼794 | TGGGTGGTT | 89% | |
| S100A7 | −4794∼−4802 | ATGGTGGGT | 89% |
| −4276∼−4284 | TGGGTGTTC | 89% | |
| −4141∼−4149 | CACCACCCA | 89% | |
| −3686∼−3694 | CACCACCCA | 89% | |
| −2717∼−2725 | CTGGTGGCT | 89% | |
| −99∼−107 | ACCCACCTG | 89% | |
| S100A8 | −4865∼−4873 | ACCCACCAC | 89% |
| −3944∼−3952 | ACCCACCTG | 89% | |
| −218∼−226 | GACCACCAA | 89% | |
| 484∼492 | TCCCACCAG | 89% | |
| S100A9 | −4428∼−4436 | GACCACCCC | 89% |
| −3295∼−3303 | TGGGTGGGC | 89% | |
| −3169∼−3177 | ACCCACCTG | 89% | |
| −2294∼−2302 | CTGGTGGGG | 89% | |
| −793∼−801 | CTGGTGGGC | 89% | |
| S100A10 | −3501∼−3509 | ACCCACTAG | 89% |
| 383∼391 | ACCCACCCG | 89% | |
| 522∼530 | TGGGTAGTC | 89% | |
| 617∼625 | CTGGTGGGG | 89% | |
| 784∼792 | TTGGTGGGT | 89% | |
| 2638∼2646 | TACCACCCA | 89% | |
| 3051∼3059 | TGGGTGGGC | 89% | |
| S100A11 | −2685∼−2693 |
| 89% |
| S100A12 | −2510∼−2518 | TGGGTGCTC | 89% |
| −2048∼−2056 | CTTGTGGGT | 89% | |
| −225∼−233 | CGGGTGGGT | 89% | |
| 78∼86 | TAGGTGGTC | 89% | |
| S100A13 | −1340∼−1348 | AGGGTGGTC | 89% |
| −1305∼−1313 | ACCCACCTG | 89% | |
| 3400∼3408 | GGGGTGGTC | 89% | |
| 3731∼3739 | CTGGTGGGT | 100% | |
| 4660∼4668 | ATGGTGGGT | 89% | |
| S100A14 | −1656∼−1664 | TGGGTGCTC | 89% |
| 138∼146 | TGGGTGGTT | 89% | |
| S100A15 | −1620∼−1628 | GTGGTGGGT | 89% |
| 1233∼1241 | ACCCCCCAG | 89% | |
| S100A16 | −483∼−491 | CTGATGGGT | 89% |
| 110∼118 | TGGGAGGTC | 89% | |
| 270∼278 | CTGGGGGGT | 89% | |
| 448∼456 | GGGGTGGTC | 89% | |
| 2194∼2202 | CTGGTGGGG | 89% | |
| 2682∼2690 | CACCACCCA | 89% |
Figure 2Binding of Gli1 to promoter region of S100A2, 4 and 6 genes in AsPC-1 cells analyzed by XChIP-PCR assay.
M: DNA Marker; PC: RNA polymerase II antibody for XChIP positive control; IP: Gli1 XChIP; IGG: mouse IgG for XChIP random control; NC: β-actin antibody for XChIP negative control.
Figure 3Identification of effective Gli1 binding sites on the S100A4 promoter.
A: S100A4 luciferase activity increases with increasing expression level of SHh in AsPC-1 cells. The pGL3-1.5 S100A4 and Renilla luciferase vectors were transiently transfected into L-Gli1i infected, L-C infected or L-Shh infected AsPC-1 cells respectively. Results were normalized for transfection efficiency using Renilla luciferase and the L-C infected group was arbitrarily given a value of 1. B: Relative luciferase activity of the S100A4 promoter Gli1 binding site mutants. AsPC-1 cells transfected by L-Shh were transiently transfected 5mg of each reporter construct including pGL3-1.5 S100A4, pGL3-1.5 S100A4 Mut1, Mut2 and Mut3 respectively. The pGL3-1.5 S100A4 was arbitrarily given a value of 1 and the activities of the other transfections were adjusted relative to this activity. C: Site 1 was responsible for Gli1 transcription. Relative luciferase activity from different AsPC-1 cell groups, L-Gli1i infection, L-Shh infection or L-C infection, transfected by different constructs, pGL3 1.5 S100A4 Mut 1–2, Mut 2–3 and Mut 1–3 with Renilla luciferase vectors. Results were normalized for transfection efficiency using Renilla luciferase and the L-C infected group was arbitrarily given a value of 1. * P<0.05, ** P<0.01.
Figure 4Hh signaling pathway promoting invasion/migration of pancreatic cancer cells through mediating S100A4.
A: The relative transcription levels of Shh, Gli1, S100A4, E-cadherin and vimentin were regulated by L-Gli1i/L-Shh transduction. B: The relative transcription levels of S100A4, E-cadherin and vimentin in L-Shh transfected cells were reversed by siS100A4 transduction. C: The expression levels of Gli1, S100A4, E-cadherin and vimentin proteins regulated by L-Gli1i/L-Shh transduction. D: The expression levels of S100A4, E-cadherin and vimentin proteins were reversed by siS100A4 transduction. E: The invasion/migration of pancreatic cancer cells regulated by L-Gli1i/L-Shh transduction were analyzed by transwell assays. F: The invasion/migration of L-Shh transfected cells were reversed by siS100A4 transduction. * P<0.05, ** P<0.01.
Figure 5Expression of Shh, Gli1, S100A4 and E-cadherin in pancreatic cancer tissues analyzed by immunohistochemistry.
A: Strong cytoplasmic staining for Shh in pancreatic cancer cells (×400); B: Weakly positive staining for Shh in ductal complex of chronic pancreatitis tissues (×400); C: Weakly positive staining for Shh in islet cells of normal cancer side tissue (×200); D: Negtive staining for Shh in normal ductal epithelial/acinar cells of cancer side tissue (×200); E: Cancer cells show strong nuclear staining for Gli1 and normal cancer side tissues were negtive (×400); F: Strong positive perinuclear cytoplasmic and part nuclear staining for Gli1 in pancreatic cancer cells (×400); G: Strong positive cytoplasmic staining for S100A4 in pancreatic cancer cells (×400); H: Positive cytoplasmic staining for E-cadherin in pancreatic cancer cells. Black arrows point to positive staining area and white arrows point to negtive staining area.