| Literature DB >> 25071801 |
Mariola Plazas1, Isabel Andújar1, Santiago Vilanova1, Pietro Gramazio1, F Javier Herraiz1, Jaime Prohens1.
Abstract
Scarlet (Solanum aethiopicum) and gboma (S. macrocarpon) eggplants are major vegetable crops in sub-Saharan Africa. Together with their respective wild ancestors (S. anguivi and S. dasyphyllum) and intermediate cultivated-wild forms they constitute the so-called scarlet and gboma eggplant complexes. We used conventional descriptors and the high-throughput phenomics tool Tomato Analyzer for characterizing 63 accessions of the scarlet eggplant complex, including the four S. aethiopicum cultivar groups (Aculeatum, Gilo, Kumba, and Shum), Intermediate S. aethiopicum-S. anguivi forms, and S. anguivi, and 12 cultivated and wild accessions of the gboma eggplant complex. A large diversity was found between both complexes, showing that they are very well differentiated from each other. Within the scarlet eggplant complex, many significant differences were also found among cultivar groups, but more differences were found for fruit traits evaluated with Tomato Analyzer than with conventional descriptors. In particular, Tomato Analyzer phenomics characterization was useful for distinguishing small fruited groups (Shum, Intermediate, and S. anguivi), as well as groups for which few or no significant differences were observed for plant traits. Multivariate principal components analysis (PCA) separated well all groups, except the Intermediate group which plotted between S. anguivi and small fruited S. aethiopicum accessions. For the gboma eggplant complex, S. dasyphyllum was clearly distinguished from S. macrocarpon and an important diversity was found in the latter. The results have shown that both complexes are hypervariable and have provided insight into their diversity and relationships. The information obtained has important implications for the conservation and management of genetic resources as well as for the selection and breeding of both scarlet and gboma eggplants.Entities:
Keywords: Solanum aethiopicum; Solanum macrocarpon; Tomato Analyzer; crop complexes; cultivar groups; descriptors; phenomics
Year: 2014 PMID: 25071801 PMCID: PMC4083197 DOI: 10.3389/fpls.2014.00318
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Figure 1Representative fruits of each of the scarlet eggplant complex (. Groups include S. aethiopicum groups Aculeatum (A), Gilo (B), Kumba (C), Shum (D), Intermediate beween S. aethiopicum and S. anguivi (E), S. anguivi (F), S. macrocarpon (G), and S. dasyphyllum (H). Fruits are not depicted at the same scale; the size of the grid cells is 1 × 1 cm.
Plant and fruit descriptors used for the characterization of a collection of scarlet eggplant complex (.
| Plant Height | cm |
| Hypocotyl Anthocyanins Intensity | (S) 0 = Absent; 9 = Very strong |
| Shoot Tip Anthocyanins Intensity | (S) 0 = Absent; 9 = Very strong |
| Stem Diameter | cm |
| Angle Between Main Branches | (S) 1 ≤ 40°; 5 > 50° |
| Leaf Pedicel Length | cm |
| Leaf Blade Length | cm |
| Leaf Blade Breadth | cm |
| Leaf Blade Lobing | (S) 1 = Very weak; 9 = Very strong |
| Leaf Surface Shape | (S) 1 = Flat; 9 = Very convex or bullate |
| Leaf Prickles | (S) 0 = None; 9 = Very many (>20) |
| Length of Largest Leaf Prickle | cm |
| Number of Flowers per Inflorescence | (M)— |
| Corolla Color | (S)1 = Greenish white; 9 = Bluish violet |
| Number of Sepals | (M)— |
| Number of Petals | (M)— |
| Number of Stamens | (M)— |
| Corolla Diameter | mm |
| Weight | g |
| Length | cm |
| Breadth | cm |
| Perimeter | cm |
| Area | cm2 |
| Width Mid-height | The width measured at ½ of the fruit's height (cm) |
| Maximum Width | The maximum horizontal distance of the fruit (cm) |
| Height Mid-width | The height measured at ½ of the fruit's width (cm) |
| Maximum Height | The maximum vertical distance of the fruit (cm) |
| Fruit Shape Index External I | The ratio of the Maximum Height to Maximum Width |
| Fruit Shape Index External II | The ratio of the Height Mid-width to Width Mid-height |
| Proximal Fruit Blockiness | Ratio of the width at the upper blockiness position to Width_MH |
| Distal Fruit Blockiness | Ratio of the width at the lower blockiness position to Width_MH |
| Fruit Shape Triangle | Ratio of the width at the upper blockiness position to the lower blockiness position |
| Ellipsoid | The ratio of the error resulting from a best-fit ellipse to the area of the fruit; smaller values indicate that the fruit is more ellipsoid |
| Circular | The ratio of the error resulting from a best-fit circle to the area of the fruit; smaller values indicate that the fruit is more circular |
| Rectangular | The ratio of the rectangle bounding the fruit to the rectangle bounded by the fruit |
| Shoulder Height | The ratio of the average height of the shoulder points above the proximal end point to Maximum Height |
| Distal End Protrusion | Ratio of the area of the distal protrusion to the total area of the fruit, multiplied by 10 |
| Obovoid | Calculated according to the formula provided in the tomato Analyzer Manual (Rodríguez et al., |
| Ovoid | Calculated according to the formula provided in the tomato Analyzer Manual (Rodríguez et al., |
| Width Widest Pos | The ratio of the height at which the Max_Width occurs to the Max_Height |
| Eccentricity | The ratio of the height of the internal ellipse to the Maximum Height |
| Proximal Eccentricity | The ratio of the area of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the fruit |
| Distal Eccentricity | The ratio of the area of the height of the internal ellipse to the distance between the bottom of the ellipse and the bottom of the fruit |
| Fruit Shape Index Internal | The ratio of the internal ellipse's height to its width |
| Eccentricity Area Index | The ratio of the area of the fruit outside the ellipse to the total area of the fruit |
Full details of the descriptors can be consulted elsewhere (IBPGR, .
Figure 2Diversity among accessions of scarlet eggplant complex (. Red fruits are physiologically mature.
Figure 3Diversity among accessions of gboma eggplant complex (. Yellow and brown fruits are physiologically mature.
Mean, range, and coefficient of variation (CV; %) for the plant and fruit descriptors studied in the scarlet eggplant complex (.
| Plant Height (cm) | 148 | 74–208 | 20.3 | 95 | 50-129 | 26.3 |
| Hypocotyl Anthocyanins Intensity | 1.44 | 0.00–9.00 | 195.8 | 1.00 | 0.00–7.00 | 209.0 |
| Shoot Tip Anthocyanins Intensity | 1.52 | 0.00–9.00 | 180.3 | 1.17 | 0.00–7.00 | 199.1 |
| Stem Diameter (cm) | 2.77 | 1.50–4.20 | 23.1 | 2.66 | 2.00–3.25 | 15.0 |
| Angle Between Main Branches | 2.65 | 1.00–5.00 | 35.8 | 3.84 | 1.00–5.00 | 34.9 |
| Leaf Pedicel Length (cm) | 5.66 | 2.33–12.80 | 40.3 | 1.59 | 0.53–2.67 | 56.0 |
| Leaf Blade Length (mm) | 21.9 | 9.67–34.2 | 20.0 | 33.3 | 26.2–40.0 | 14.2 |
| Leaf Blade Breadth (cm) | 16.7 | 7.0–31.0 | 24.6 | 20.0 | 14.8–25.0 | 19.5 |
| Leaf Blade Lobing | 4.40 | 1.00–7.40 | 25.0 | 6.13 | 4.20–9.00 | 26.3 |
| Leaf Surface Shape | 2.59 | 1.00–5.80 | 74.9 | 5.00 | 1.00–9.00 | 34.2 |
| Leaf Prickles | 0.48 | 0.00–6.60 | 322.9 | 1.66 | 0.00–9.00 | 163.3 |
| Length of Largest Leaf Prickle (cm) | 0.14 | 0.00–2.06 | 328.6 | 0.42 | 0.00–1.45 | 131.0 |
| Number of Flowers per Inflorescence | 3.34 | 1.00–12.6 | 83.5 | 3.66 | 1.20–5.40 | 36.9 |
| Corolla Color | 2.81 | 1.00–3.50 | 25.6 | 6.00 | 5.00–7.00 | 17.3 |
| Number of Sepals | 5.66 | 5.00–7.00 | 9.5 | 5.27 | 5.00–6.00 | 7.2 |
| Number of Petals | 5.62 | 5.00–8.00 | 10.7 | 5.19 | 5.00–6.00 | 7.3 |
| Number of Stamens | 5.98 | 5.00–8.00 | 14.9 | 5.29 | 5.00–6.00 | 8.1 |
| Corolla Diameter (mm) | 19.2 | 11.1–33.3 | 21.4 | 38.0 | 23.5–55.3 | 23.9 |
| Weight (g) | 48 | 1–351 | 147.9 | 111 | 22–177 | 43.2 |
| Length (cm) | 3.59 | 1.10–7.65 | 36.2 | 4.99 | 2.97–6.70 | 19.6 |
| Breadth (cm) | 4.42 | 1.16–11.14 | 50.0 | 6.66 | 3.83–8.46 | 20.6 |
| Perimeter (cm) | 13.9 | 3.9–30.0 | 41.0 | 20.2 | 11.9–25.2 | 20.8 |
| Area (cm2) | 13.0 | 1.1–40.3 | 66.9 | 27.1 | 9.3–41.4 | 37.6 |
| Width Mid-height (cm) | 4.20 | 1.21–9.72 | 45.7 | 6.55 | 3.79–8.44 | 23.1 |
| Maximum Width (cm) | 4.24 | 1.21–9.90 | 46.2 | 6.60 | 3.81–8.49 | 23.0 |
| Height Mid-width (cm) | 3.18 | 1.07–7.06 | 39.6 | 4.58 | 2.94–6.79 | 23.6 |
| Maximum Height (cm) | 3.58 | 1.10–7.17 | 36.0 | 4.96 | 3.03–6.92 | 23.0 |
| Fruit Shape Index External I | 0.93 | 0.54–1.89 | 36.6 | 0.77 | 0.68–1.34 | 23.4 |
| Fruit Shape Index External II | 0.87 | 0.32–1.92 | 46.0 | 0.72 | 0.60–1.32 | 26.4 |
| Proximal Fruit Blockiness | 0.66 | 0.46–0.79 | 12.1 | 0.74 | 0.68–0.80 | 5.4 |
| Distal Fruit Blockiness | 0.64 | 0.39–0.76 | 12.5 | 0.62 | 0.57–0.65 | 3.2 |
| Fruit Shape Triangle | 1.07 | 0.69–1.76 | 18.7 | 1.20 | 1.07–1.32 | 6.7 |
| Ellipsoid | 0.07 | 0.02–0.33 | 100.0 | 0.05 | 0.03–0.07 | 20.0 |
| Circular | 0.14 | 0.02–0.38 | 64.3 | 0.15 | 0.08–0.28 | 33.3 |
| Rectangular | 0.52 | 0.44–0.61 | 7.7 | 0.52 | 0.46–0.55 | 5.8 |
| Shoulder Height | 0.03 | 0.00–0.14 | 133.3 | 0.03 | 0.01–0.05 | 33.3 |
| Distal End Protrusion | 0.02 | 0.00–0.17 | 150.0 | 0.01 | 0.00–0.02 | 100.0 |
| Obovoid | 0.07 | 0.00–0.21 | 71.4 | 0.01 | 0.00–0.05 | 100.0 |
| Ovoid | 0.08 | 0.00–0.23 | 75.0 | 0.15 | 0.08–0.19 | 20.0 |
| Width Widest Pos | 0.49 | 0.39–0.59 | 8.2 | 0.45 | 0.42–0.49 | 4.4 |
| Eccentricity | 0.71 | 0.44–0.79 | 14.1 | 0.74 | 0.69–0.78 | 4.1 |
| Proximal Eccentricity | 0.89 | 0.81–0.96 | 1.2 | 0.89 | 0.89–0.89 | 0.0 |
| Distal Eccentricity | 0.88 | 0.77–0.90 | 2.3 | 0.89 | 0.88–0.89 | 0.0 |
| Fruit Shape Index Internal | 0.86 | 0.31–1.60 | 44.2 | 0.72 | 0.60–1.32 | 26.4 |
| Eccentricity Area Index | 0.44 | 0.34–0.61 | 15.9 | 0.43 | 0.38–0.46 | 4.7 |
See Table .
indicate, respectively, significant at P < 0.001, P < 0.01, P < 0.05, or non-significant differences between scarlet and gboma eggplant complexes means, according to a two-tailed t-test.
Mean values for scarlet eggplant complex groups (.
| 5 | 37 | 10 | 2 | 8 | 1 | ||
| Plant Height (cm) | 151ab | 156b | 114 | 135ab | 153ab | 150ab | 0.0033 |
| Hypocotyl Anthocyanins Intensity | 7.80b | 0.31 | 2.74 | 0.50 | 1.49 | 0.00 | <0.0001 |
| Shoot Tip Anthocyanins Intensity | 7.80b | 0.23 | 2.98 | 2.50 | 1.68 | 0.00 | <0.0001 |
| Angle Between Main Branches | 1.72ab | 2.77ab | 3.21b | 2.00ab | 2.35ab | 1.00 | 0.0134 |
| Leaf Pedicel Length (cm) | 7.88b | 5.23ab | 6.74ab | 3.47 | 5.82ab | 3.00 | 0.0342 |
| Leaf Blade Length (mm) | 23.8bc | 21.5abc | 25.5c | 14.3 | 20.9abc | 15.5ab | 0.0031 |
| Leaf Blade Breadth (cm) | 17.8ab | 16.4ab | 19.5b | 10.5 | 16.1ab | 12.0ab | 0.0412 |
| Leaf Surface Shape | 1.00 | 2.54ab | 3.88ab | 4.33b | 2.00ab | 1.00 | 0.0469 |
| Leaf Prickles | 5.32b | 0.00 | 0.00 | 0.00 | 0.47 | 0.00 | <0.0001 |
| Length of Largest Leaf Prickle (cm) | 1.62b | 0.00 | 0.00 | 0.00 | 0.07 | 0.00 | <0.0001 |
| Number of Flowers per Inflorescence | 7.18b | 2.18 | 1.97 | 3.33 | 7.51b | 7.50b | <0.0001 |
| Number of Sepals | 5.97ab | 5.60ab | 6.33b | 5.27 | 5.06 | 5.00 | <0.0001 |
| Number of Petals | 5.92ab | 5.50ab | 6.39b | 5.33ab | 5.16 | 5.00 | <0.0001 |
| Number of Stamens | 6.01ab | 5.91ab | 7.18b | 5.31 | 5.06 | 5.00 | <0.0001 |
| Corolla Diameter (mm) | 19.1ab | 19.3ab | 22.7b | 12.5 | 16.8ab | 13.2 | 0.0017 |
Means within rows separated by different letters are significantly different at P < 0.05, according to the Student-Newman-Keuls test.
Number of significant (.
| Aculeatum | 5 | 5 | 8 | 4 | 5 | |
| Gilo | 8 | 1 | 0 | 1 | 1 | |
| Kumba | 7 | 13 | 5 | 4 | 7 | |
| Shum | 12 | 9 | 14 | 1 | 2 | |
| Intermediate | 15 | 9 | 16 | 0 | 0 | |
| 14 | 14 | 20 | 3 | 6 | ||
Mean values for scarlet eggplant complex groups (.
| 5 | 37 | 10 | 2 | 8 | 1 | ||
| Weight (g) | 28.4c | 32.4c | 166.6d | 3.9 | 4.8 | 1.0 | <0.0001 |
| Length (cm) | 2.62cd | 4.03d | 4.21d | 1.43ab | 2.20bc | 1.10 | <0.0001 |
| Breadth (cm) | 4.63c | 4.09c | 8.22d | 2.02 | 2.06 | 1.16 | <0.0001 |
| Perimeter (cm) | 13.5c | 13.8c | 22.5d | 5.9ab | 6.9 | 4.0 | <0.0001 |
| Area (cm2) | 9.7c | 13.1c | 25.2c | 2.5ab | 3.3 | 1.2 | <0.0001 |
| Width Mid-height (cm) | 4.59 | 3.96 | 7.41c | 1.97 | 2.00 | 1.24 | <0.0001 |
| Maximum Width (cm) | 4.61 | 3.98 | 7.54c | 1.98 | 2.02 | 1.25 | <0.0001 |
| Height Mid-width (cm) | 1.86ab | 3.82c | 2.92bc | 1.39 | 2.03ab | 1.15 | <0.0001 |
| Maximum Height (cm) | 2.71cd | 4.00d | 4.32d | 1.48ab | 2.07bc | 1.17 | <0.0001 |
| Fruit Shape Index External I | 0.59 | 1.06 | 0.57 | 0.76ab | 1.04 | 0.93ab | <0.0001 |
| Fruit Shape Index External II | 0.41 | 1.03 | 0.40 | 0.73ab | 1.03 | 0.92ab | <0.0001 |
| Proximal Fruit Blockiness | 0.73 | 0.65ab | 0.71 | 0.69ab | 0.62ab | 0.57 | 0.0235 |
| Distal Fruit Blockiness | 0.72 | 0.65ab | 0.57 | 0.64ab | 0.60 | 0.64ab | 0.0035 |
| Fruit Shape Triangle | 1.01ab | 1.01ab | 1.33 | 1.07ab | 1.10ab | 0.90 | 0.0001 |
| Ellipsoid | 0.09 | 0.04 | 0.18 | 0.04 | 0.04 | 0.02 | <0.0001 |
| Circular | 0.29 | 0.10 | 0.25 | 0.10 | 0.08 | 0.02 | <0.0001 |
| Rectangular | 0.57 | 0.51ab | 0.54ab | 0.50ab | 0.48 | 0.50ab | 0.0007 |
| Shoulder Height | 0.11 | 0.02 | 0.08 | 0.02 | 0.01 | 0.00 | <0.0001 |
| Obovoid | 0.05ab | 0.08ab | 0.03 | 0.03 | 0.07ab | 0.13 | 0.0073 |
| Ovoid | 0.08ab | 0.06ab | 0.16 | 0.10ab | 0.08ab | 0.01 | <0.0001 |
| Width Widest Pos | 0.47ab | 0.50 | 0.43 | 0.46ab | 0.49ab | 0.49 | <0.0001 |
| Eccentricity | 0.55 | 0.75 | 0.55 | 0.76 | 0.78 | 0.78 | <0.0001 |
| Fruit Shape Index Internal | 0.41 | 1.02 | 0.41 | 0.72ab | 1.03 | 0.92 | <0.0001 |
| Eccentricity Area Index | 0.56 | 0.41 | 0.54 | 0.42 | 0.39 | 0.39 | <0.0001 |
Means within rows separated by different letters are significantly different at P < 0.05, according to the Student-Newman-Keuls test.
In order to avoid scaling effects caused by accession means being proportional to standard deviations, ANOVAs were performed on log transformed data.
Correlation coefficients between plant and fruit descriptors and the two first principal components the for scarlet eggplant complex (.
| Hypocotyl Anthocyanins Intensity | 0.198 | |
| Shoot Tip Anthocyanins Intensity | 0.218 | |
| Angle Between Main Branches | −0.160 | |
| Leaf Prickles | 0.230 | |
| Length of Largest Leaf Prickle | 0.230 | |
| Number of Flowers per Inflorescence | 0.233 | |
| Number of Sepals | −0.193 | |
| Number of Petals | −0.206 | |
| Number of Stamens | −0.203 | |
| Weight | −0.194 | |
| Length | −0.312 | |
| Breadth | −0.231 | |
| Perimeter | −0.205 | −0.191 |
| Area | −0.186 | −0.218 |
| Width Mid-height | −0.232 | |
| Maximum Width | −0.233 | |
| Height Mid-width | −0.315 | |
| Maximum Height | −0.309 | |
| Fruit Shape Index External I | 0.182 | −0.185 |
| Fruit Shape Index External II | 0.197 | −0.177 |
| Proximal Fruit Blockiness | −0.160 | |
| Distal Fruit Blockiness | 0.167 | |
| Ellipsoid | −0.197 | |
| Circular | −0.200 | |
| Shoulder Height | −0.195 | |
| Ovoid | −0.172 | |
| Width Widest Pos | 0.169 | |
| Eccentricity | 0.233 | |
| Fruit Shape Index Internal | 0.202 | −0.178 |
| Eccentricity Area Index | −0.231 | |
| Variance Explained (%) | 33.7 | 16.6 |
Only those correlations with absolute values ≥0.15 have been listed.
Figure 4Similarities based on 18 plant and 27 fruit descriptors among 63 scarlet eggplant complex (. First and second components account for 33.7 and 16.6% of the total variation, respectively. The six groups considered are represented by different symbols: S. aethiopicum groups Aculeatum (open triangle), Gilo (filled triangle), Kumba (open circle), and Shum (filled circle); Intermediate between S. aethiopicum and S. anguivi (open square); and, S. anguivi (filled square).
Mean values for gboma eggplant complex groups (.
| 11 | 1 | ||
| Leaf Surface Shape | 4.64 | 9.00 | 0.0061 |
| Leaf Prickles | 0.99 | 9.00 | 0.0004 |
| Length of Largest Leaf Prickle (cm) | 0.33 | 1.45 | 0.0442 |
| Weight (g) | 119.1 | 21.9 | 0.0026 |
| Length (cm) | 5.18 | 2.97 | 0.0068 |
| Breadth (cm) | 6.92 | 3.83 | 0.0075 |
| Perimeter (cm) | 21.0 | 11.9 | 0.0136 |
| Area (cm2) | 28.8 | 9.3 | 0.0140 |
| Width Mid-height (cm) | 6.80 | 3.79 | 0.0206 |
| Maximum Width (cm) | 6.85 | 3.81 | 0.0199 |
| Maximum Width (cm) | 5.14 | 3.03 | 0.0371 |
| Obovoid | 0.01 | 0.05 | 0.0093 |
| Ovoid | 0.16 | 0.08 | 0.0064 |
| Width Widest Pos | 0.44 | 0.49 | 0.0488 |
Means within rows separated by different letters are significantly different at P < 0.05, according to the Student-Newman-Keuls test.
In order to avoid scaling effects caused by accession means being proportional to standard deviations, ANOVAs were performed on log transformed data.
Correlation coefficients between plant and fruit descriptors and the two first principal components for the gboma eggplant complex (.
| Plant Height | 0.219 | |
| Hypocotyl Anthocyanins Intensity | −0.266 | |
| Shoot Tip Anthocyanins Intensity | −0.247 | |
| Stem Diameter | 0.206 | |
| Leaf Blade Length | −0.212 | |
| Leaf Blade Breadth | −0.156 | |
| Leaf Prickles | 0.150 | |
| Number of Flowers per Inflorescence | 0.207 | |
| Number of Petals | −0.172 | |
| Number of Stamens | −0.161 | |
| Corolla Diameter | −0.217 | |
| Weight | −0.216 | |
| Length | −0.265 | |
| Breadth | −0.243 | |
| Perimeter | −0.212 | −0.154 |
| Area | −0.201 | −0.154 |
| Width Mid-height | −0.238 | |
| Maximum Width | −0.239 | |
| Height Mid-width | −0.288 | |
| Maximum Height | −0.271 | |
| Fruit Shape Index External I | −0.255 | |
| Fruit Shape Index External II | 0.152 | −0.245 |
| Proximal Fruit Blockiness | ||
| Distal Fruit Blockiness | 0.245 | |
| Fruit Shape Triangle | −0.154 | |
| Ellipsoid | −0.169 | |
| Circular | −0.168 | |
| Ovoid | −0.197 | |
| Width Widest Pos | 0.224 | |
| Eccentricity | 0.230 | |
| Proximal Eccentricity | 0.194 | |
| Fruit Shape Index Internal | 0.152 | |
| Eccentricity Area Index | −0.220 | |
| Variance Explained (%) | 31.3 | 22.5 |
Only those correlations with absolute values ≥0.15 have been listed.
Figure 5Similarities based on 18 plant and 27 fruit descriptors among 12 gboma eggplant complex (. First and second components account for 31.3 and 22.5% of the total variation, respectively. The two species are represented by different symbols: S. macrocarpon (open triangle), and S. dasyphyllum (filled triangle).