Literature DB >> 25070284

In-cell NMR and EPR spectroscopy of biomacromolecules.

Robert Hänsel1, Laura M Luh, Ivan Corbeski, Lukáš Trantirek, Volker Dötsch.   

Abstract

The dream of cell biologists is to be able to watch biological macromolecules perform their duties in the intracellular environment of live cells. Ideally, the observation of both the location and the conformation of these macromolecules with biophysical techniques is desired. The development of many fluorescence techniques, including superresolution fluorescence microscopy, has significantly enhanced our ability to spot proteins and other molecules in the crowded cellular environment. However, the observation of their structure and conformational changes while they attend their business is still very challenging. In principle, NMR and EPR spectroscopy can be used to investigate the conformation and dynamics of biological macromolecules in living cells. The development of in-cell magnetic resonance techniques has demonstrated the feasibility of this approach. Herein we review the different techniques with a focus on liquid-state in-cell NMR spectroscopy, provide an overview of applications, and discuss the challenges that lie ahead.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  G-quadruplexes; in-cell EPR spectroscopy; in-cell NMR spectroscopy; intrinsically disordered proteins; molecular crowding

Mesh:

Substances:

Year:  2014        PMID: 25070284     DOI: 10.1002/anie.201311320

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  26 in total

1.  Cobalt-based paramagnetic probe to study RNA-protein interactions by NMR.

Authors:  Leah M Seebald; Christopher M DeMott; Srivathsan Ranganathan; Papa Nii Asare-Okai; Anastasia Glazunova; Alan Chen; Alexander Shekhtman; Maksim Royzen
Journal:  J Inorg Biochem       Date:  2017-02-24       Impact factor: 4.155

2.  Algal autolysate medium to label proteins for NMR in mammalian cells.

Authors:  Carmelo Fuccio; Enrico Luchinat; Letizia Barbieri; Sara Neri; Marco Fragai
Journal:  J Biomol NMR       Date:  2016-04-22       Impact factor: 2.835

Review 3.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

4.  Distance Measurement on an Endogenous Membrane Transporter in E. coli Cells and Native Membranes Using EPR Spectroscopy.

Authors:  Benesh Joseph; Arthur Sikora; Enrica Bordignon; Gunnar Jeschke; David S Cafiso; Thomas F Prisner
Journal:  Angew Chem Int Ed Engl       Date:  2015-03-31       Impact factor: 15.336

Review 5.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

Review 6.  Recent progress of in-cell NMR of nucleic acids in living human cells.

Authors:  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Masato Katahira
Journal:  Biophys Rev       Date:  2020-03-06

Review 7.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

8.  Ligand Induced Conformational Changes of a Membrane Transporter in E. coli Cells Observed with DEER/PELDOR.

Authors:  Benesh Joseph; Arthur Sikora; David S Cafiso
Journal:  J Am Chem Soc       Date:  2016-02-02       Impact factor: 15.419

9.  Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation.

Authors:  Grzegorz Nawrocki; Po-Hung Wang; Isseki Yu; Yuji Sugita; Michael Feig
Journal:  J Phys Chem B       Date:  2017-11-30       Impact factor: 2.991

10.  In-Cell Sensitivity-Enhanced NMR of Intact Viable Mammalian Cells.

Authors:  Rupam Ghosh; Yiling Xiao; Jaka Kragelj; Kendra K Frederick
Journal:  J Am Chem Soc       Date:  2021-11-01       Impact factor: 15.419

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